Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g10
         (834 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...   220   2e-57
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...   220   2e-57
DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...   219   5e-57
AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal pr...   214   1e-55
BT021430-1|AAX33578.1|  290|Drosophila melanogaster GM06171p pro...    49   7e-06
AY060371-1|AAL25410.1|  503|Drosophila melanogaster LD23637p pro...    31   1.5  
AE014297-3670|AAF56367.1|  863|Drosophila melanogaster CG11168-P...    31   1.5  
BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...    31   2.6  
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...    31   2.6  
AE014298-714|AAS65262.1|   84|Drosophila melanogaster CG15785-PA...    29   5.9  

>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score =  220 bits (538), Expect = 2e-57
 Identities = 100/133 (75%), Positives = 116/133 (87%)
 Frame = -3

Query: 406 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 227
           A K Q+K++KG  G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 134 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 193

Query: 226 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 47
           LT+EAAMKKIEDNNTLVF+ H  ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 194 LTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 253

Query: 46  ARDYDALDVANKM 8
           ARDYDALD+ANK+
Sbjct: 254 ARDYDALDIANKI 266


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score =  220 bits (538), Expect = 2e-57
 Identities = 100/133 (75%), Positives = 116/133 (87%)
 Frame = -3

Query: 406 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 227
           A K Q+K++KG  G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 201

Query: 226 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 47
           LT+EAAMKKIEDNNTLVF+ H  ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 202 LTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 261

Query: 46  ARDYDALDVANKM 8
           ARDYDALD+ANK+
Sbjct: 262 ARDYDALDIANKI 274


>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score =  219 bits (534), Expect = 5e-57
 Identities = 100/133 (75%), Positives = 115/133 (86%)
 Frame = -3

Query: 406 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 227
           A K Q+K++KG  G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRANVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 201

Query: 226 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 47
           LT+EAAMKKIEDNNTLVF+ H  ANK H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 202 LTTEAAMKKIEDNNTLVFLTHLRANKSHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 261

Query: 46  ARDYDALDVANKM 8
           ARDYDALD+ANK+
Sbjct: 262 ARDYDALDIANKI 274


>AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal
           protein L23a protein.
          Length = 269

 Score =  214 bits (522), Expect = 1e-55
 Identities = 99/133 (74%), Positives = 115/133 (86%)
 Frame = -3

Query: 406 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 227
           A K Q+K++K   G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 135 AKKVQKKIIKA-FGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 193

Query: 226 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 47
           LT+EAAMKKIEDNNTLVF+ H  ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 194 LTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 253

Query: 46  ARDYDALDVANKM 8
           ARDYDALD+ANK+
Sbjct: 254 ARDYDALDIANKI 266


>BT021430-1|AAX33578.1|  290|Drosophila melanogaster GM06171p
           protein.
          Length = 290

 Score = 49.2 bits (112), Expect = 7e-06
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = -2

Query: 290 VPKEVSA*EKSHGCLQHH*IPSHV*SSNEED*R*QHLGLYCPH-KCKQAPYQGC-SQETL 117
           VP+E+ A ++ HG +QHH +P+     +EED   QH GL  PH   +Q   + C S + L
Sbjct: 163 VPQEIGAHQEPHGRVQHHQVPTDHRGGHEEDRGQQHPGL--PHTPARQQEPRACRSAQAL 220

Query: 116 *YKCC*SQHSHQA*W*EESVXXXXXXXXRIGRCQQN 9
            ++    + +H A W EE +        R G CQQ+
Sbjct: 221 RHQGGQGERAHPARWPEEGLCAPGARLRRPGHCQQD 256


>AY060371-1|AAL25410.1|  503|Drosophila melanogaster LD23637p
           protein.
          Length = 503

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 10/49 (20%), Positives = 30/49 (61%)
 Frame = +2

Query: 5   CHFVGNVQCVIISSESYVRFLLTIRPDESVDFSNIYIIEFLDCSLDMVL 151
           CH + N+ CV   SE  +R+   I  ++ + + ++++++ L+ + ++++
Sbjct: 431 CHDIENINCVCQDSED-LRYFAYITKEQDLHYCHVFMVDSLELAKEIIM 478


>AE014297-3670|AAF56367.1|  863|Drosophila melanogaster CG11168-PA
           protein.
          Length = 863

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 10/49 (20%), Positives = 30/49 (61%)
 Frame = +2

Query: 5   CHFVGNVQCVIISSESYVRFLLTIRPDESVDFSNIYIIEFLDCSLDMVL 151
           CH + N+ CV   SE  +R+   I  ++ + + ++++++ L+ + ++++
Sbjct: 791 CHDIENINCVCQDSED-LRYFAYITKEQDLHYCHVFMVDSLELAKEIIM 838


>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 460
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 460
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>AE014298-714|AAS65262.1|   84|Drosophila melanogaster CG15785-PA
           protein.
          Length = 84

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 824 CPESSCRCPQTCSPCSQTCG 765
           CPE +C+CPQ C    +  G
Sbjct: 38  CPEDACQCPQECVAIGEYAG 57


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,608,092
Number of Sequences: 53049
Number of extensions: 485375
Number of successful extensions: 1705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)