Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11g09
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 330 7e-91
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 324 4e-89
11_01_0710 - 5830475-5830595,5831498-5834124 32 0.72
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.3
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 3.9
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 3.9
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.9
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 8.9
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 330 bits (812), Expect = 7e-91
Identities = 157/258 (60%), Positives = 192/258 (74%), Gaps = 1/258 (0%)
Frame = -2
Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 645
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+MEIQ+NGGTI DKV
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVD 196
Query: 644 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIG 465
+ + EK IPVD+VF +DEMID I +RW +LPRKTH+GLRKVACIG
Sbjct: 197 YGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256
Query: 464 AWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIT 285
AWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A TE+D +EK IT
Sbjct: 257 AWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDIT 310
Query: 284 PMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 105
PMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFG
Sbjct: 311 PMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 370
Query: 104 HGRFQTPADKAAFMGTLK 51
HGRFQT +K F G LK
Sbjct: 371 HGRFQTTDEKQRFFGKLK 388
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 324 bits (797), Expect = 4e-89
Identities = 153/250 (61%), Positives = 189/250 (75%), Gaps = 1/250 (0%)
Frame = -2
Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 645
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+MEIQ+NGGTI DKV
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVD 196
Query: 644 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIG 465
+ + EK IPVD+VF +DEMID I +RW +LPRKTH+GLRKVACIG
Sbjct: 197 YGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256
Query: 464 AWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIT 285
AWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A TE+D +EK IT
Sbjct: 257 AWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDIT 310
Query: 284 PMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 105
PMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFG
Sbjct: 311 PMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 370
Query: 104 HGRFQTPADK 75
HGRFQT +K
Sbjct: 371 HGRFQTTDEK 380
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.9 bits (69), Expect = 0.72
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 574 QSIISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 693
+S+ISSW + TG S CS+ + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 795 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 679
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDS 603
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 722 LLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMI 579
L Q K+ ++E +++ ++ D+V L KP PV F DE++
Sbjct: 2664 LTSQHGKRIAVIENEVHDFSMPDRVNAINPGLAKPGPVIETFCSDELV 2711
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 308 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 213
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 452 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 303
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 302 SEKSITPMGGFPHYGEVNN 246
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,508,947
Number of Sequences: 37544
Number of extensions: 545466
Number of successful extensions: 1179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -