Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g09
         (909 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   475   e-134
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   475   e-134
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   475   e-134
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   475   e-134
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   475   e-134

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  475 bits (1170), Expect = e-134
 Identities = 216/264 (81%), Positives = 237/264 (89%)
 Frame = -2

Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 642
           W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKW
Sbjct: 148 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKW 207

Query: 641 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 462
           AREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 208 AREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 267

Query: 461 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 282
           WHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITP
Sbjct: 268 WHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITP 327

Query: 281 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 102
           MGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GH
Sbjct: 328 MGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGH 387

Query: 101 GRFQTPADKAAFMGTLKKDRIREE 30
           GRFQTPADK AFMG LKKDR++EE
Sbjct: 388 GRFQTPADKLAFMGPLKKDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  475 bits (1170), Expect = e-134
 Identities = 216/264 (81%), Positives = 237/264 (89%)
 Frame = -2

Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 642
           W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKW
Sbjct: 137 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKW 196

Query: 641 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 462
           AREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 197 AREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 256

Query: 461 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 282
           WHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITP
Sbjct: 257 WHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITP 316

Query: 281 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 102
           MGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GH
Sbjct: 317 MGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGH 376

Query: 101 GRFQTPADKAAFMGTLKKDRIREE 30
           GRFQTPADK AFMG LKKDR++EE
Sbjct: 377 GRFQTPADKLAFMGPLKKDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  475 bits (1170), Expect = e-134
 Identities = 216/264 (81%), Positives = 237/264 (89%)
 Frame = -2

Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 642
           W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKW
Sbjct: 124 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKW 183

Query: 641 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 462
           AREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 184 AREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 243

Query: 461 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 282
           WHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITP
Sbjct: 244 WHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITP 303

Query: 281 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 102
           MGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GH
Sbjct: 304 MGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGH 363

Query: 101 GRFQTPADKAAFMGTLKKDRIREE 30
           GRFQTPADK AFMG LKKDR++EE
Sbjct: 364 GRFQTPADKLAFMGPLKKDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  475 bits (1170), Expect = e-134
 Identities = 216/264 (81%), Positives = 237/264 (89%)
 Frame = -2

Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 642
           W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKW
Sbjct: 124 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKW 183

Query: 641 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 462
           AREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 184 AREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 243

Query: 461 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 282
           WHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITP
Sbjct: 244 WHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITP 303

Query: 281 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 102
           MGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GH
Sbjct: 304 MGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGH 363

Query: 101 GRFQTPADKAAFMGTLKKDRIREE 30
           GRFQTPADK AFMG LKKDR++EE
Sbjct: 364 GRFQTPADKLAFMGPLKKDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  475 bits (1170), Expect = e-134
 Identities = 216/264 (81%), Positives = 237/264 (89%)
 Frame = -2

Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 642
           W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKW
Sbjct: 137 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKW 196

Query: 641 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 462
           AREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 197 AREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 256

Query: 461 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 282
           WHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITP
Sbjct: 257 WHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITP 316

Query: 281 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 102
           MGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GH
Sbjct: 317 MGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGH 376

Query: 101 GRFQTPADKAAFMGTLKKDRIREE 30
           GRFQTPADK AFMG LKKDR++EE
Sbjct: 377 GRFQTPADKLAFMGPLKKDRLKEE 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,822,727
Number of Sequences: 53049
Number of extensions: 907733
Number of successful extensions: 2385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2385
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4443987051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)