Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g08
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   0.43 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   0.57 
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   0.76 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   1.8  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    24   2.3  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    23   4.0  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    23   5.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    23   5.3  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    22   9.3  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    22   9.3  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    22   9.3  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    22   9.3  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -2

Query: 152 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHN 3
           S FG+    +C+      +  FT S K        W   N +V ++H +N
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYN 169


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 163 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 65
           WSTS    ++LL I   +  P SK L   +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 116 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLH 6
           Q + A  + ++L    +   P  WEND    LLK  H
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHH 786


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 145 SAATLLTIANSLSRPFSKFLRSAVKSLWPC 56
           SA TLL IA+ L +      ++ +K LW C
Sbjct: 538 SALTLLPIADKLVQEKLSSCKNLLKVLWDC 567


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -2

Query: 140 SNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHL 9
           SN+++ CE  I+++++ ++ +  +   VP   +  N+    KHL
Sbjct: 70  SNLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHL 113


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 114 VYHGHFRNFYAQQ*NRC 64
           + HG +++FY    NRC
Sbjct: 516 ILHGGYKSFYENHKNRC 532


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 137 NVINYCEQFITAIFEIFTLSSKIVVAVPVN-WEN 39
           N+IN    FIT +      + ++V+ +P N W++
Sbjct: 116 NIINIIVVFITTLLTCLAFAIELVLFLPHNTWQS 149


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 66  NDFTAERKNFENGRDKL 116
           N+ T  RKNF N RD L
Sbjct: 787 NNLTEARKNFSNYRDCL 803


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 140 SNVINYCEQFITAIFEIFTLSSKIVVAVPVNW-ENDNLSVLLKHLHN 3
           S V ++C  F   +F+I  L+  I     +NW +N   S +L ++ +
Sbjct: 449 SAVHSFCGNFRRFMFDIVRLTVSITPIESLNWIQNRFQSTVLGNMED 495


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 111 YHGHFRNFYAQQ*NRC 64
           Y G+F  FYA +  RC
Sbjct: 432 YKGNFSQFYATREERC 447


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 437

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 79 AVKSLWPCPSIGKT 38
          A++SLWP PS+ ++
Sbjct: 23 ALRSLWPPPSLNES 36


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 48  IDGHGHNDFTAERKNFENGRDKLFAIVNNV 137
           ID  GH DF++E  +     D  F +V+ V
Sbjct: 99  IDSPGHVDFSSEVSSASRLCDGAFVLVDAV 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,634
Number of Sequences: 5004
Number of extensions: 10752
Number of successful extensions: 42
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)