Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11g05
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 308 9e-85
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 261 8e-71
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 32 0.12
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.86
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.6
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 6.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.1
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 8.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.1
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 308 bits (755), Expect = 9e-85
Identities = 140/248 (56%), Positives = 172/248 (69%)
Frame = -2
Query: 848 TRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNT 669
T RF C G L HFMGCSTFS+YTVV +IS+ + APLD VCLLGCG+ TGYGAA T
Sbjct: 132 TSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATIT 191
Query: 668 AKVEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDY 489
A ++ G + A+F A RI G+D+NP+K A FG +F+NP D
Sbjct: 192 ADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDL 251
Query: 488 DKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPF 309
PIQ VL+ TDGGL++TF+C GNV MR+ALEACHKGWG S++IGVAAAG+EISTRPF
Sbjct: 252 QSPIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPF 311
Query: 308 QLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 129
QLVTGR W+G AFGG K R +P LV EYL+ KL +D+++TH PLKEINEAF MH G
Sbjct: 312 QLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGN 371
Query: 128 SIRAVVDM 105
I+ V+ +
Sbjct: 372 CIKTVLSI 379
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 261 bits (640), Expect = 8e-71
Identities = 123/248 (49%), Positives = 163/248 (65%)
Frame = -2
Query: 848 TRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNT 669
T RF C+ + L H+MGCS+FSQYTVV +ISL ++ +APL +CLLGCGV TG+GA ++
Sbjct: 129 TSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHS 188
Query: 668 AKVEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDY 489
AKVE GS A+ A+RII +DIN DK AKKFG +F++
Sbjct: 189 AKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKV 248
Query: 488 DKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPF 309
K + Q ++D+TDGG++Y F+C GNV M+ L+ CHKGWG +IGVAAAG+ + RPF
Sbjct: 249 -KDLVQYVIDVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAAAGKTLDFRPF 307
Query: 308 QLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 129
+VTGR G+AFGG K R +P VDEY++ +DE++T+ PLK IN+AF MH GK
Sbjct: 308 LVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGK 367
Query: 128 SIRAVVDM 105
IR VVDM
Sbjct: 368 CIRCVVDM 375
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 31.9 bits (69), Expect = 0.12
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 575 RIIGVDINPDKFEVAKKFGVNEFVNP 498
R++G+D +PD + A++ G+N +V P
Sbjct: 57 RVVGIDASPDMIKAARELGLNAYVIP 82
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.86
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 337 AAATPMITDTPHPLWQASSAALMVPTFPIHSKVY--SRPPSVKSTNTC*IXXXXXXXXXX 510
++ T ++ T ++ S+ VPT I S + S P S+ S++T
Sbjct: 240 SSLTNTVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS-SSGSSQDSTTI 298
Query: 511 XXXPNFLATSNLSGLMSTPIMRLAPA 588
P+ +ATS L S+PI AP+
Sbjct: 299 DSTPSTIATSTLQPTTSSPITTSAPS 324
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 274 AVPFQVRPVTSWNGRVLISSPAAATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPS 453
+VP+ PVTS N + S+P +TP+ T + V + P+ + + S
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTS 560
Query: 454 VKSTNT 471
V T+T
Sbjct: 561 VPYTST 566
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 274 AVPFQVRPVTSWNGRVLISSPAAATPMIT 360
+VP+ PVTS N + S+P +TP+ T
Sbjct: 560 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 588
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 319 VLISSPA-AATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPSVKSTN 468
VL++S A A T + H A +A +++P+F + SK+ + S+K N
Sbjct: 1000 VLVNSEADTALRAKTTSQHLKQSAMAAKVVLPSFIVTSKISKQTKSIKELN 1050
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 292 RPVTSWNGRVLISSPAAATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPSVKS 462
R T WN + +SP+ + D+P+ L + A T P ++ RP S+ S
Sbjct: 177 RRFTEWNVPLRETSPSPSET--ADSPNKLPKQKHPAYSFVTLPKREEILKRPASLHS 231
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 758 LCKVAEAAPLDKVCLLGCGVPTGY 687
+CKV E A L CLL C T +
Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTF 1002
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 368 GVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGG 264
G V+IG + G E++ + +T T G GG
Sbjct: 110 GALVVIGTSLGGHELTNGGKEFITSATSLGALLGG 144
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = -1
Query: 348 CSCCW---RRDQHSSIPTCYRSHLEGNSFWR 265
C CW + D + P C R + E N WR
Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWR 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,506
Number of Sequences: 5004
Number of extensions: 74079
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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