Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11g05
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 336 1e-92
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 262 3e-70
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 260 1e-69
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 254 7e-68
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 221 4e-58
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 204 5e-53
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 195 3e-50
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 121 7e-28
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466... 120 2e-27
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 89 4e-18
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 75 7e-14
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 39 0.006
07_01_0224 - 1646114-1648396 30 2.8
05_03_0648 + 16563147-16565557,16565655-16565850 29 3.7
10_08_0353 - 17101261-17102244 29 6.4
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 28 8.5
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 336 bits (827), Expect = 1e-92
Identities = 156/244 (63%), Positives = 189/244 (77%)
Frame = -2
Query: 842 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 663
RF G+ +YHFMG STFSQYTVV ++S+ K+ APLDKVCLLGCGV TG GA NTAK
Sbjct: 134 RFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAK 193
Query: 662 VEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDK 483
VE GS AIF A+RIIG+DI+ KF+VAK FGV EFVNPKD+DK
Sbjct: 194 VEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDK 253
Query: 482 PIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQL 303
PIQQV+VDLTDGG++Y+FECIGNV MR+ALE CHKGWG SVI+GVAA+G+EISTRPFQL
Sbjct: 254 PIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQL 313
Query: 302 VTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSI 123
VTGR WKGTAFGG+KSR VP LV++YL K++ +DE+VTH++ L +IN+AF L+H G +
Sbjct: 314 VTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCL 373
Query: 122 RAVV 111
R V+
Sbjct: 374 RCVL 377
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 262 bits (641), Expect = 3e-70
Identities = 121/247 (48%), Positives = 164/247 (66%), Gaps = 1/247 (0%)
Frame = -2
Query: 842 RFRCKG-QELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTA 666
RF +G Q +YHF+G STFS+YTVV + K+ AAPLDKVC+L CG+ TG+GA +N A
Sbjct: 132 RFTARGGQPVYHFLGTSTFSEYTVVHVGCVAKIHPAAPLDKVCVLSCGISTGFGATVNVA 191
Query: 665 KVEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYD 486
K G AIF A+RIIGVD+NP KFE+AKKFG +FVNPKDYD
Sbjct: 192 KPPKGCTVAIFGLGAVGLAAMEGARISGASRIIGVDLNPAKFELAKKFGCTDFVNPKDYD 251
Query: 485 KPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQ 306
KP+QQV++++T+GG++ + EC GN M +A E H GWGV+V++GVA T P
Sbjct: 252 KPVQQVIIEMTNGGVDRSVECTGNAAAMISAFECVHDGWGVAVLVGVAGKDAAFKTHPTN 311
Query: 305 LVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKS 126
+ RT +GT FG YK R +P +V+ Y+ K+L L++F+TH+VP EIN AF LM +G+S
Sbjct: 312 FLNERTLRGTFFGNYKPRTDLPGVVEMYMNKELELEKFITHSVPFSEINTAFDLMLSGES 371
Query: 125 IRAVVDM 105
+R ++ M
Sbjct: 372 LRCIIRM 378
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 260 bits (637), Expect = 1e-69
Identities = 118/246 (47%), Positives = 161/246 (65%)
Frame = -2
Query: 842 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 663
RF G+ +YHF+G STFS+YTV+ + K+ AAPLDKVC+L CG+ TG GA +N AK
Sbjct: 132 RFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGATINVAK 191
Query: 662 VEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDK 483
GS AIF A+RIIG+D+N ++FE A+KFG EFVNPKD+DK
Sbjct: 192 PPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVNPKDHDK 251
Query: 482 PIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQL 303
P+QQVL ++T+GG++ + EC GN+ M A E H GWGV+V++GV E T P
Sbjct: 252 PVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNF 311
Query: 302 VTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSI 123
+ RT KGT FG YK R +P +V+ Y++K+L +++F+TH+VP EIN AF LMH G+ I
Sbjct: 312 LNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGI 371
Query: 122 RAVVDM 105
R ++ M
Sbjct: 372 RCIIRM 377
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 254 bits (622), Expect = 7e-68
Identities = 116/246 (47%), Positives = 159/246 (64%)
Frame = -2
Query: 842 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 663
RF KG+ ++HF+G STFS+YTV+ L K+ APLDKVC+L CG TG+GA +N AK
Sbjct: 132 RFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAK 191
Query: 662 VEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDK 483
+ G AIF A+RIIGVD+NP KFE AKKFG +FVNPKD+ K
Sbjct: 192 PKKGQTVAIFGLGAVGLAAMEGARLSGASRIIGVDLNPAKFEQAKKFGCTDFVNPKDHSK 251
Query: 482 PIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQL 303
P+ +VL+++T+GGL+ EC GN+ M + E H GWGV+V++GV + T P
Sbjct: 252 PVHEVLIEMTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNF 311
Query: 302 VTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSI 123
+ +T KGT FG YK R +P +V+ Y++K+L L++F+TH+VP EIN AF LM G+S+
Sbjct: 312 LNEKTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESL 371
Query: 122 RAVVDM 105
R V+ M
Sbjct: 372 RCVMRM 377
>02_05_0070 - 25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 221 bits (541), Expect = 4e-58
Identities = 102/246 (41%), Positives = 152/246 (61%)
Frame = -2
Query: 842 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 663
RF +G+ +YH+ S+FS+YTVV KV P+D++CLL CGV G GAA A
Sbjct: 747 RFSLRGKPVYHYCAVSSFSEYTVVHSGCAVKVGPTVPMDRICLLSCGVSAGLGAAWKVAD 806
Query: 662 VEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDK 483
+ GS+ IF A+ IIGVD NP+K E K FGV +F+NP++ ++
Sbjct: 807 ISKGSSVVIFGLGTVGLSVAQGAKLRGASIIIGVDTNPEKQEKGKAFGVTDFINPEELNE 866
Query: 482 PIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQL 303
P+QQV+ LT+GG +Y+FEC+G+ G + AL++C GWG++V +GV A E+S L
Sbjct: 867 PVQQVVKRLTNGGADYSFECVGDTGVVSTALQSCSDGWGLTVTLGVPKAKPEVSAHYALL 926
Query: 302 VTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSI 123
++GRT KG+ FGG++ + +P LVD+Y K++ +D+ VTH++ IN+A LM K +
Sbjct: 927 LSGRTLKGSLFGGWRPKSDLPLLVDKYANKEIQVDDLVTHDLSFDYINKALELMLENKCL 986
Query: 122 RAVVDM 105
R V+ M
Sbjct: 987 RCVIHM 992
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 204 bits (499), Expect = 5e-53
Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 2/243 (0%)
Frame = -2
Query: 827 GQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEPGS 648
G+ + HF+ S+F++YTVV + K+ P CLL CG+ TG GAA A VEPGS
Sbjct: 48 GEPIRHFLSVSSFAEYTVVDITHIVKLDVGFPPAMACLLSCGISTGVGAAWKVAAVEPGS 107
Query: 647 NCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYD-KPIQQ 471
+ A+F A RIIGVD+NPDKF+V K+ G+ +F+NP D K + +
Sbjct: 108 SVAVFGLGAVGLAVAQGARMRGAKRIIGVDLNPDKFDVGKRLGMTDFINPNDTGGKTVSE 167
Query: 470 VLVDLTDGG-LEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTG 294
V+ ++T GG +Y FECIG+ M A ++ GWG ++++GV+ IS +++ G
Sbjct: 168 VIKEMTGGGGADYCFECIGSTSVMAEAFQSTRNGWGKTILLGVSGNKAPISIPSHEILRG 227
Query: 293 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 114
R+ G+ FGG K + +P L +YL+K+L L+EF+TH + +EIN AF L+ GKSIR +
Sbjct: 228 RSVIGSLFGGIKPKNDIPMLAQKYLDKELELEEFITHEMGFEEINRAFELLTQGKSIRCI 287
Query: 113 VDM 105
+ M
Sbjct: 288 IWM 290
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 195 bits (476), Expect = 3e-50
Identities = 102/250 (40%), Positives = 145/250 (58%), Gaps = 2/250 (0%)
Frame = -2
Query: 848 TRRFRCK-GQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALN 672
T RFR + G ++HF+G S+FS+YTVV + +V A P LL CG TG GAA
Sbjct: 72 TARFRDRHGAPIHHFLGVSSFSEYTVVDANQVVRVDPAVPPATASLLSCGATTGVGAAWK 131
Query: 671 TAKVEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKD 492
AKVEPGS+ AIF +G+ + KKFGV F+NP++
Sbjct: 132 LAKVEPGSSVAIFGLGA-----------------VGLAVAEGARICGKKFGVTHFINPQE 174
Query: 491 Y-DKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTR 315
DKP+ Q ++++TDGG +Y FECIG M A + +GWG ++I+GV G +S
Sbjct: 175 LGDKPVSQAIIEMTDGGADYCFECIGLASVMSDAFRSSREGWGKTIILGVEMHGAPLSIP 234
Query: 314 PFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHA 135
+++ G+ G+ FGG K ++ +P L D+YL K+L LD+F+TH VPLK+IN AF L+
Sbjct: 235 SLEILNGKCVMGSLFGGVKPKQDIPILADKYLNKELELDKFITHEVPLKDINTAFDLLLQ 294
Query: 134 GKSIRAVVDM 105
GKS+R + M
Sbjct: 295 GKSLRCTIWM 304
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 121 bits (292), Expect = 7e-28
Identities = 48/139 (34%), Positives = 89/139 (64%), Gaps = 2/139 (1%)
Frame = -2
Query: 521 GVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVA 342
G+ +F+N K KP+ +V++++TDGG++Y+FEC G +R A + H GWG++V++G+
Sbjct: 2 GITDFINSKASGKPVHEVIMEMTDGGVDYSFECTGITDVLREAFVSTHDGWGLTVVLGIH 61
Query: 341 AAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPL--DEFVTHNVPLK 168
A + P +L GR G FG +K + +P++V++ ++ ++ + D F+T +P
Sbjct: 62 ATPRMLPLHPMELFDGRRITGCVFGDFKGKSQLPEIVEKCMQGEININFDGFITQELPFA 121
Query: 167 EINEAFHLMHAGKSIRAVV 111
+IN+AF L+ GKS+R ++
Sbjct: 122 DINKAFQLLEEGKSLRCLL 140
>03_01_0636 -
4664472-4664588,4664695-4664856,4664984-4665061,
4665157-4665221,4665476-4665558,4666052-4666414,
4666512-4666555,4666632-4666765,4666881-4666917
Length = 360
Score = 120 bits (289), Expect = 2e-27
Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 1/249 (0%)
Frame = -2
Query: 848 TRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNT 669
TR + +G+ L + ++FSQYTVV + KV A P CLLGC TG
Sbjct: 129 TRFWDGEGKPLSDTVAVTSFSQYTVVDVNQVVKVDPAVPPKIACLLGCCGGTGEPEIRRY 188
Query: 668 AKVEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDY 489
+EP + RI G K+FGV +FVNP
Sbjct: 189 --IEPAWGRSSMEVGQSATRFVGGCLRAGIRRIGG-----------KEFGVTDFVNPSQL 235
Query: 488 -DKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRP 312
DK + +V+ +TDGG +Y+FECIG M A G G ++I+GV + +
Sbjct: 236 GDKSVSEVINAMTDGGADYSFECIGISSVMTEA------GRGKTIILGVEKDSQPLCLPS 289
Query: 311 FQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAG 132
F+ + G+ G+ FGG K + +P L ++ + K+L L++ VTH V L EIN AF L+ G
Sbjct: 290 FEFLFGKCVMGSLFGGAKPKTDIPILAEKCMNKELELEKLVTHEVGLTEINTAFDLLLQG 349
Query: 131 KSIRAVVDM 105
KS+R ++ M
Sbjct: 350 KSLRCIIWM 358
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 89.0 bits (211), Expect = 4e-18
Identities = 50/110 (45%), Positives = 64/110 (58%)
Frame = -2
Query: 818 LYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEPGSNCA 639
+YHF+ STF++YTV+ K+ APL+K+ LL CGV TG GAA NTA V GS A
Sbjct: 164 VYHFLNTSTFAEYTVIDSACAVKINPKAPLEKMSLLSCGVSTGVGAAWNTANVSKGSTVA 223
Query: 638 IFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDY 489
IF A+RIIGVDINP+KF +K+ + + N KDY
Sbjct: 224 IFGLGAIGLAVAEGARLRGASRIIGVDINPEKF--SKECALVQ--NDKDY 269
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 74.9 bits (176), Expect = 7e-14
Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 3/251 (1%)
Frame = -2
Query: 848 TRRF-RCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALN 672
TR F R G+ +Y + ++Y VV +L + + P + +LGC V T YGA +
Sbjct: 175 TRLFLRSNGKPVYMY-SMGGLAEYCVVPANALAVLPNSLPYTESAILGCAVFTAYGALRH 233
Query: 671 TAKVEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKD 492
A++ G + A+ A+ +I VD+ +K + A+ G VN
Sbjct: 234 AAEMRAGDSVAVIGVGGVGSSCLQIAKAFGASEVIAVDVLDEKLQNARTLGATHTVNAAK 293
Query: 491 YDKPIQQVLVDLTDG-GLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTR 315
D + + ++TDG G++ E +G T ++ G G +V+IG+AA
Sbjct: 294 ED--AVEKIKEITDGRGVDVAVEALGKALTFSQCAKSVRDG-GKAVMIGLAATNVMGEVD 350
Query: 314 PFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHA 135
+LV R K G ++R+ +P++V L ++ +E N A+ +
Sbjct: 351 ITRLVR-RQVKIIGSYGARARQDLPQIVKLAESGAFNLKNTISRKCKFEEANSAYEDLDR 409
Query: 134 GKSI-RAVVDM 105
GK + RAVV++
Sbjct: 410 GKIVGRAVVEI 420
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 38.7 bits (86), Expect = 0.006
Identities = 32/155 (20%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Frame = -2
Query: 575 RIIGVDINPDKFEVAKKFGVNEFVN----PKDYDKPIQQVLVDLTDGGLEYTFECIGNVG 408
R++ VD++ + VA+ G + V +D + ++++ + G ++ + +C G
Sbjct: 236 RVVIVDVDEHRLSVARSLGADAAVRVSARAEDVGEEVERIRAAM-GGDIDVSLDCAGFSK 294
Query: 407 TMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVD 228
T+ ALEA +G G ++G+ G T P L + + G ++ +++ P ++
Sbjct: 295 TVATALEAT-RGGGKVCLVGM---GHNEMTVP--LTSAAIREVDVVGIFRYKDTWPLCIE 348
Query: 227 EYLEKKLPLDEFVTHNVPL--KEINEAFHLMHAGK 129
K+ + +TH +++ EAF + G+
Sbjct: 349 FLRSGKIDVKPLITHRFGFSQEDVEEAFEVSARGR 383
>07_01_0224 - 1646114-1648396
Length = 760
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 856 RWPLGDSAVKDRNSTISWVVQH 791
RWP+ +SA R + WV+QH
Sbjct: 636 RWPISNSAHHGRKMLVDWVLQH 657
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = +1
Query: 286 QVRPVTSWN-GRV--LISSPAAATPMIT 360
QVR T+W GRV L+ SPA+A P+IT
Sbjct: 423 QVRDTTAWTLGRVFELLHSPASANPIIT 450
>10_08_0353 - 17101261-17102244
Length = 327
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/98 (21%), Positives = 39/98 (39%)
Frame = -2
Query: 572 IIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRAA 393
+ +D+ ++ + P+ YD + ++ GG+ C+ G RA
Sbjct: 163 VAALDVAAGEYRILDSSNYGRRFGPRFYDAAMSKIR-----GGVA---RCVAAAG--RAG 212
Query: 392 LEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKG 279
EA GW + ++ G+ A +E S F + W G
Sbjct: 213 AEADAGGWKLRMVAGLPAQTDESSCGLFAIKCMELWDG 250
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 265 PPKAVPFQVRPVTSWNGRVLISSPAAATPMITDTPHPLWQASSAALMV 408
PP P P S GRV + + AA + DTP +W L++
Sbjct: 88 PPPEAPPAASPSPS-GGRVRLYASAARAKYLVDTPEHIWGRLDEGLLL 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,541,243
Number of Sequences: 37544
Number of extensions: 496015
Number of successful extensions: 1313
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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