Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g05
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.52 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.52 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.52 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 221 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 120
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 221 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 120
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 221 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 120
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 507 KFIDSKFLSYLKLVRVDVNTNNAIGTC 587
           +  D    +Y KLVR  VNT++ +  C
Sbjct: 31  RLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 507 KFIDSKFLSYLKLVRVDVNTNNAIGTC 587
           +  D    +Y KLVR  VNT++ +  C
Sbjct: 31  RLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 491 YDKPIQQVLVDLTDGGLEYTFECIGN 414
           +D+  Q+V+     G LE  F C+GN
Sbjct: 140 FDQLGQEVIYTACVGLLERAFRCLGN 165


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +2

Query: 410 LHFQYIQKCILDHHQSNPPI 469
           L  +Y+++C+L+  +  PP+
Sbjct: 395 LEMKYLERCLLETLRMYPPV 414


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 367 PHPLWQASSAALMVPTFPIHSKVYSR 444
           PH  WQ S+A L+   F   ++V  R
Sbjct: 105 PHMAWQLSTAHLLAQLFLKSTEVTPR 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,544
Number of Sequences: 438
Number of extensions: 5097
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)