Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f20
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    30   1.9  
03_06_0653 - 35305279-35306163                                         29   4.5  
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    28   7.8  

>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
            246893-247240,247882-248721,248786-248832,249470-249596,
            249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -2

Query: 798  QFVSTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPA 619
            QF ST   N   D D +    Q E    ++ +  P FE+  V+GD  +    S  Q+P  
Sbjct: 995  QFSSTGGRN---DEDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGIVVHPISLDQEPSN 1051

Query: 618  A 616
            A
Sbjct: 1052 A 1052


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -3

Query: 479 KKRA*AMNSCRSCQTSVLPTSTRRTSIFWSPYLNSPSENNVTS 351
           KKR  A      C+TS  P +TRRT   W P L S  E   +S
Sbjct: 249 KKRNSAAVPSTGCRTSRAPATTRRT---WEPSLPSVEEERESS 288


>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 534 LHTLCHSIHPYIGLFRQCRTHRYIHQQKLQ 623
           LH + H  HP +  F   R H Y+H  K +
Sbjct: 167 LHNIGHENHPTVLRFYSLRVHDYVHTIKFR 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,834
Number of Sequences: 37544
Number of extensions: 354514
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)