Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f20
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    55   5e-08
Z49912-1|CAA90140.1|  588|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
 Frame = -2

Query: 783 FNVNHTVDSDDFEGDVQTEKQEFSEMR-SKPQFEVDLVRGDTTLGFTCSYLQDPPAASAD 607
           FNVNH+VD D  EG      Q  + +  + P F V++ +GD  L F    +  P     D
Sbjct: 96  FNVNHSVDMD--EGFDDEPSQAVAPVPVAMPPFTVEITKGDQRLCFHLELV--PVDDQPD 151

Query: 606 EYNDVFGIDEITLYKGEWN------DKVYAVAXXXXXXXXXXXL-MNLLEEKGISNEFVQ 448
           EY+  F ++E  +     N       +VYA +           L +  LEE+G+   F +
Sbjct: 152 EYD--FRVEEFYVAPSAKNGNEDVPSEVYASSGKYIDPDLHDLLFVRYLEERGLDARFCK 209

Query: 447 KLSDFSTAYEHTAYINLLESISKF 376
            L  ++T YEH+ Y+ LL+ I KF
Sbjct: 210 TLVAYATHYEHSQYVGLLDKIKKF 233


>Z49912-1|CAA90140.1|  588|Caenorhabditis elegans Hypothetical
           protein T24F1.2 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 100 KTKLHHRRPL*I*TK*KFYLKSTNAAQCNCQNSRH 204
           + KLH +RP  I +   F + ST  +QC+ QNSR+
Sbjct: 333 RKKLHKKRPNKIVSS-AFSVASTPISQCSSQNSRN 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,955,262
Number of Sequences: 27780
Number of extensions: 337956
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)