Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f18
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 126 3e-30
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 124 7e-30
07_01_0385 - 2871628-2872131 28 1.2
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 1.6
07_03_1237 + 25073010-25073513 27 2.7
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 26 4.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 26 4.7
07_03_0039 - 12718972-12720699 26 4.7
03_05_1144 + 30719953-30720456 25 6.3
02_01_0679 - 5048653-5051394 25 6.3
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 25 6.3
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 25 8.3
04_04_1651 - 35057525-35057680,35058302-35058311,35058429-350585... 25 8.3
03_05_0669 + 26589867-26589927,26590674-26590858,26590950-265910... 25 8.3
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 25 8.3
01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323 25 8.3
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 25 8.3
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 126 bits (303), Expect = 3e-30
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = -3
Query: 258 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 79
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 78 CKRTVAGGAWVFSTTAASSCRSAVRR 1
C + AGGA+ +T +A + RS +RR
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTIRR 110
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 124 bits (300), Expect = 7e-30
Identities = 54/83 (65%), Positives = 64/83 (77%)
Frame = -3
Query: 249 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 70
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 69 TVAGGAWVFSTTAASSCRSAVRR 1
AGGA+ +T +A + RS +RR
Sbjct: 93 VKAGGAYTMNTASAVTVRSTIRR 115
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 147 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 49
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 168 EVTQHAKYTCSFCGKDAM 115
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 114 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 19
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 25.8 bits (54), Expect = 4.7
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Frame = -3
Query: 267 RFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIW 91
RF ++V K G Y L K AKYT G A RS G
Sbjct: 66 RFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDRSSAGAV 125
Query: 90 SCKRCKRTV 64
SCK ++ V
Sbjct: 126 SCKLREKNV 134
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 132 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRR 1
C +KR+ G W C RC+ + + A +S R RR
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRR 101
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 41 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 193
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
>03_05_1144 + 30719953-30720456
Length = 167
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 72 RTVAGGAWVFSTTAASSCRSAVRR 1
R +GG W ++ +SSC S++RR
Sbjct: 144 RFYSGGFWRSPSSGSSSCASSLRR 167
>02_01_0679 - 5048653-5051394
Length = 913
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = -1
Query: 263 LPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 165
LP VPK LELLA++ + V L V+W + WK
Sbjct: 864 LPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 129 GKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAV 7
GKD + +CV ++ + + GG WV + C S +
Sbjct: 880 GKD--RTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTI 918
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -3
Query: 141 CSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 49
C + G + ++ CV IW+ R G W
Sbjct: 284 CRYIGPNKLRNFCVDIWNWLRAVPEKLQGKW 314
>04_04_1651 -
35057525-35057680,35058302-35058311,35058429-35058569,
35058675-35058784,35058907-35059006,35059108-35059308,
35059674-35059879,35060504-35060716,35060785-35060923,
35061370-35061606,35061688-35061893,35062664-35062759,
35062900-35063040
Length = 651
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 251 PNVPKRLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 117
P+ R L +A + +P Y + KR+ NTQ L+ ++R++
Sbjct: 569 PDTELRESLRLAVAEILLPAYRSFLKRFGLSNTQEFLSLELMRLV 613
>03_05_0669 +
26589867-26589927,26590674-26590858,26590950-26591045,
26591128-26591223
Length = 145
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -1
Query: 245 VPKRLELLANMAHVTVPLYVKW 180
+P EL+ +++ +P+YV W
Sbjct: 84 LPDASELIVGSSYICIPVYVSW 105
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 201 GASLRKMVKKMEVTQHAKYTCSFCG 127
GAS+ +VK V QHAK C+F G
Sbjct: 415 GASMEFLVKL--VPQHAKKQCAFLG 437
>01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323
Length = 217
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 53 LGYSPLLLPHH 21
LGYSPL+L HH
Sbjct: 44 LGYSPLVLDHH 54
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 236 RLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 117
R + + + +T L++ W W P TQS + FV +L
Sbjct: 84 RSPVSSTLPQITGRLFITWGILWSFPETQSYI--FVTSLL 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,199,868
Number of Sequences: 37544
Number of extensions: 158194
Number of successful extensions: 422
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -