Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f14
(182 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 81 3e-17
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 81 3e-17
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 81 3e-17
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 81 3e-17
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 81 3e-17
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 59 9e-11
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 29 0.061
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 0.57
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 1.00
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 24 2.3
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 23 4.0
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 23 4.0
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 23 5.3
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 23 5.3
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 23 7.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 22 9.3
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 130
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 206
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 282
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 358
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 80.6 bits (190), Expect = 3e-17
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL FAGK LED +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 58.8 bits (136), Expect = 9e-11
Identities = 25/54 (46%), Positives = 38/54 (70%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
M I +KTLTGK I + +P + V+ +K+++ +KEG+P QQRL +AGK + D K
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDK 54
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 29.5 bits (63), Expect = 0.061
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -2
Query: 163 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDSK 2
+ + IK + + +V LK+ IA + ++QRL +AG+ L+D +
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEE 57
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 0.57
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 160 QIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLED 8
+I + T+ K + +TV +LK+ IA P D+ +L AG+ L +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRN 55
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 1.00
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 167 KNANIHQNIDGQNHYRRNGTRRDGGRSQAKN 75
K+ N Q+I G+++ R+N GRS N
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSN 1548
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 2.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 151 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQR 38
IK+L + +TE A+ +A + +KI E DQQ+
Sbjct: 429 IKSLHESVSSLDTERADLLAKINEKIESLELEKHDQQK 466
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 130 TITAETEPAETVADLKQKIADKEGVPVDQ 44
++TA P E V L Q +AD+ G+ +Q
Sbjct: 116 SVTAVDTPQEDVDLLMQTVADEAGLEFNQ 144
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 136 GKTITAETEPAETVADLKQKIADKEGVPVDQQRLXFAGKXLEDS 5
G I +TV D K+K+ + V +L + G +DS
Sbjct: 9 GNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDS 52
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 23.0 bits (47), Expect = 5.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 124 TAETEPAETV---ADLKQKIADKEGVPVDQQRLXFAGKXLED 8
T E + E V A ++QK+A+KE +Q+ A K ED
Sbjct: 297 TVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKARED 338
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 23.0 bits (47), Expect = 5.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3
Query: 111 NPQRRWPISSKKLPI 67
N +RRWP+S+++L I
Sbjct: 637 NLERRWPLSTEELLI 651
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 22.6 bits (46), Expect = 7.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = -1
Query: 170 CKNANIHQNIDG-QNHYR----RNGTRRDGGRSQ 84
CK ANIH+ I G N Y + G+ GG+ Q
Sbjct: 1232 CKKANIHEFILGLPNGYNTLCGQKGSSLSGGQKQ 1265
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 126 LPPKRNPQRRW 94
LPP NP+ RW
Sbjct: 371 LPPLTNPKERW 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,934
Number of Sequences: 5004
Number of extensions: 10949
Number of successful extensions: 40
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -