Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f14
(182 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 27 0.027
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 25 0.083
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 1.8
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 1.8
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 1.8
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 20 2.4
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 20 2.4
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 19 4.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 7.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 18 9.5
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 26.6 bits (56), Expect = 0.027
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 167 KNANIHQNIDGQNHYRRNGTRRDGGR 90
+NAN +QN D QN ++NG R++ R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464
Score = 22.2 bits (45), Expect = 0.59
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 167 KNANIHQNIDGQNHYRRNGTRRDGGR 90
+N N QN + QN R+N +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519
Score = 19.0 bits (37), Expect = 5.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 167 KNANIHQNIDGQNHYRRNGTRRDGGR 90
+NA+ +QN + QN R+N R++ +
Sbjct: 445 QNAD-NQNANKQNGNRQNDNRQNDNK 469
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 25.0 bits (52), Expect = 0.083
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 80 LLEIGHRLCGFRFGGN 127
+LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 157 IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 47
I++K G + TA +E AD + D VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 157 IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 47
I++K G + TA +E AD + D VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 157 IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 47
I++K G + TA +E AD + D VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 178 SNSVKMQIFIKTLTGKTITAETEPAET 98
++++K + + L T+TAETE ++
Sbjct: 2 ASAIKALLIVCALFIYTVTAETEEGQS 28
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 178 SNSVKMQIFIKTLTGKTITAETEPAET 98
++++K + + L T+TAETE ++
Sbjct: 2 ASAIKALLIVCALFIYTVTAETEEGQS 28
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 19.4 bits (38), Expect = 4.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 138 RAKPLPPKR 112
R PLPPKR
Sbjct: 636 RLPPLPPKR 644
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 18.6 bits (36), Expect = 7.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3
Query: 123 PPKRNPQRRWPIS 85
PP++NP P+S
Sbjct: 822 PPQQNPYMFLPVS 834
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 18.2 bits (35), Expect = 9.5
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +2
Query: 38 SLLIYGHTFFIGNFLLEIGHRLCGFRFG 121
SLL+ + + HRLC F G
Sbjct: 156 SLLVVAEVCYFTAHVTHPRHRLCVFVAG 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,296
Number of Sequences: 438
Number of extensions: 675
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used: 2576460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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