Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f12
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    23   5.4  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    23   7.2  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    22   9.5  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 2    RADPXTGVERAPNIPSFYKNQF 67
            R DP +     PNIP F  N F
Sbjct: 1198 RIDPQSITFELPNIPGFNLNMF 1219


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 64  LIFVKRRDVRSSLHS 20
           + ++ R DVRSSLH+
Sbjct: 364 ITYLNREDVRSSLHA 378


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 1188

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 5  ADPXTGVERAPNIPSFYKNQ 64
          +DP +G    P IP F++++
Sbjct: 17 SDPYSGRRPIPTIPKFFRDR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,885
Number of Sequences: 5004
Number of extensions: 7092
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)