Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f12
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    27   2.7  
12_02_1111 - 26157796-26160330                                         26   3.6  
02_04_0517 - 23599154-23600089                                         25   8.3  

>08_01_0091 +
           664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 85  MRELSDIKLKRTDTTL 132
           M  +SDIKL RTDTTL
Sbjct: 1   MAHISDIKLIRTDTTL 16


>12_02_1111 - 26157796-26160330
          Length = 844

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  EHPVVLQKSV*YTGPSMRELSDIK 108
           E P V+QK +   GP  R L+D+K
Sbjct: 285 EQPTVVQKVIDMRGPQARVLTDLK 308


>02_04_0517 - 23599154-23600089
          Length = 311

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 124 YLFFSA*YLKVPSLRDQYIKLIFVKRRDVRSSLHSRXRVG 5
           Y +F A   K+P +R+ + K   V++R  R  +H R   G
Sbjct: 129 YRYFGA-AKKLPGVRELFDKPPEVRKRRTRYEIHKRINAG 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,021
Number of Sequences: 37544
Number of extensions: 40693
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)