Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f12
         (161 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    21   6.7  
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    20   8.9  

>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
            symporter protein.
          Length = 1127

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 6    PTRXREWSELRTSRRFTKISLIYWSLNEG 92
            PT   E     TS++ T I  +YW  ++G
Sbjct: 925  PTEVLEELTQFTSKKKTGIIDVYWLYDDG 953


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 129 CSICSFQLNI*KFP 88
           CSIC+ Q  + ++P
Sbjct: 142 CSICAAQTTVKRYP 155


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,668
Number of Sequences: 2352
Number of extensions: 1413
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 563,979
effective HSP length: 33
effective length of database: 486,363
effective search space used:  9727260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)