Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f12
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    20   2.4  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    19   7.4  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      19   7.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    18   9.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 37  EHPVVLQKSV*YTGPSMRELS 99
           E PVV Q S  YT P  +++S
Sbjct: 66  ETPVVSQGSDSYTAPDGQQVS 86


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 29  RAPNIPSFYKNQFNILVP 82
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 29  RAPNIPSFYKNQFNILVP 82
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/27 (25%), Positives = 12/27 (44%)
 Frame = +3

Query: 24  WSELRTSRRFTKISLIYWSLNEGTFRY 104
           WSE   +     + L + S+N+    Y
Sbjct: 572 WSEDAMTEALEAVRLGHMSINQAAIHY 598


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 94  LSDIKLKRTD 123
           LSD+ +KRT+
Sbjct: 837 LSDLSIKRTE 846


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 60  FL*NDGMFGARSTPV 16
           F  +DG+FG   +PV
Sbjct: 248 FTVHDGIFGMALSPV 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,143
Number of Sequences: 438
Number of extensions: 490
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)