Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f11
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 146 1e-35
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 146 1e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 142 2e-34
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.84
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 1.1
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 30 1.5
08_02_0802 + 21386248-21387468 29 2.6
07_03_1296 + 25583195-25584385 29 2.6
01_05_0305 + 20659199-20660026,20660147-20660179 29 2.6
02_05_0460 - 29224525-29224620,29225525-29226625 28 4.5
12_02_0020 - 12388777-12389062,12389637-12389818 28 5.9
03_05_0528 - 25268396-25269217 28 5.9
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 5.9
08_02_0955 + 22994266-22995630 27 7.8
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 146 bits (353), Expect = 1e-35
Identities = 77/158 (48%), Positives = 102/158 (64%), Gaps = 5/158 (3%)
Frame = -2
Query: 473 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 294
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 293 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 123
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 122 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEFKGGY 15
DR + G P D G G A EF+ +
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEFQPSF 156
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 146 bits (353), Expect = 1e-35
Identities = 77/158 (48%), Positives = 102/158 (64%), Gaps = 5/158 (3%)
Frame = -2
Query: 473 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 294
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 293 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 123
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 122 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEFKGGY 15
DR + G P D G G A EF+ +
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEFQPSF 156
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 142 bits (344), Expect = 2e-34
Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 11/167 (6%)
Frame = -2
Query: 473 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 294
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 293 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGPVG-RPDAPARSAE 123
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + GP G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 122 DRSAYRRTP---AAPGVAPHDKKADVGPGSADLE--FKG---GYGRG 6
DR + P AP D + G A+ + F+G G+GRG
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRGSRPGFGRG 166
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.84
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 443 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 267
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 266 TNEGIE-YLRIFLHLP 222
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = -2
Query: 344 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 174
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 173 VRRGP-----VGRPDAPARSAED 120
R+ + +P PA S +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 137 ARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 6
AR RS+ RR+P+ G A + G ++ L++ GG G G
Sbjct: 58 ARGKRSRSSRRRSPSGSGSAATKGRWARGSPASPLDYSGGSGSG 101
>08_02_0802 + 21386248-21387468
Length = 406
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 37 SAEPGPTSAFLS*GATPGAAGVRLYADLSSAE-RAGASGRPTGPRRTVSVRTERLSVAGT 213
S P P+S F G V DLS A R + RP GPR + R E +++
Sbjct: 123 SGSPEPSSGFFVAVVVDGEM-VLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRDA 181
Query: 214 ISGGR 228
GGR
Sbjct: 182 GRGGR 186
>07_03_1296 + 25583195-25584385
Length = 396
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -2
Query: 233 LHLPPEIVPATLKRSVR--TETVRRGPVGRPDAPARSAEDRSAYRRTPA---APGVAPHD 69
LHL P PA +KRS R + + P DA R ++ A+ + AP +AP
Sbjct: 76 LHLQPNPDPAEVKRSYRRLSNLLSSNPRPGADAALRCVQEAFAHLSDSSANPAPALAPPP 135
Query: 68 KKADVGPGSA 39
A G SA
Sbjct: 136 APASGGDASA 145
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -2
Query: 233 LHLPPEI-----VPATLKRSVRTETVRRGPVG--RPDAPARSAEDRSAYRRTPAAPGVA 78
L LPP + A S+ TV GP G +P P + +++RR P+A GV+
Sbjct: 122 LKLPPRLQAAAAAAAAADSSLSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVGVS 180
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -2
Query: 161 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 39
PV APA AE S R P P PH A V SA
Sbjct: 270 PVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASA 310
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 158 VGRPDAPARSAEDRSAYRRTPAAP 87
+GRP R E+RS +RTP+ P
Sbjct: 47 IGRPKGEGREWEERSRSQRTPSPP 70
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 50 PGSADLEFKGGYGRG 6
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -2
Query: 185 RTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAP--HDKKADVGPGSADLEFKGGYG 12
R + PV APA + +AY PAAP VAP D G G GG+G
Sbjct: 17 RRSDLAGAPVLAASAPAAANPYAAAYAPAPAAP-VAPAGGDFSRFGGRGRGGGAGGGGWG 75
Query: 11 RG 6
RG
Sbjct: 76 RG 77
>08_02_0955 + 22994266-22995630
Length = 454
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 31 SRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRT 174
SRS P +A LS +TP +A V A S A A R PRR+
Sbjct: 45 SRSKTPPHNAAVLS--STPASAAVDFVAASDSDAGADADARLASPRRS 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,688
Number of Sequences: 37544
Number of extensions: 276541
Number of successful extensions: 957
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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