Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f10
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    23   4.1  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    23   7.1  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    23   7.1  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   7.1  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    22   9.4  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 121 ISIPELSCSVR--PANGQSCTIFRPERSSLLQPLDLNGQV 8
           I IP+ S S    P+N  + + F P+ SSL  P  ++  +
Sbjct: 64  IQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISESI 103


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 146 LTALTKLHDQHSRALLFRPPRKRTVLYNLS 57
           LT    L D     LLF    K T++ NLS
Sbjct: 600 LTYRNNLSDGEQSPLLFNFKTKNTIIQNLS 629


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 62  DCTRLSVCGADGTGELGNADRAAWLGL 142
           D  R+  CG   +GELG  +R+   GL
Sbjct: 107 DRRRVCSCGEGLSGELGQGNRSNSQGL 133


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 139 P*PSCTISIPELSCSVRPANGQSCTIFRPERSSL 38
           P PS + SI     +V+P + Q+ T   PE S +
Sbjct: 8   PKPSISPSIASSFPTVKPFSSQNSTTSNPELSHI 41


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 173 YNPSMNTIWLTALTKLHD 120
           Y+P  N I  T+ T++HD
Sbjct: 114 YDPKSNAIVGTSFTRVHD 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 942,027
Number of Sequences: 5004
Number of extensions: 15077
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)