Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f10
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0100 + 12861588-12862601 25 2.1
01_06_1160 - 34996840-34996979,34997316-34997478,34997970-349983... 27 2.1
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 26 3.7
07_03_0253 + 15853307-15855220 26 3.7
12_02_0762 - 22915841-22916473,22917044-22917057,22918945-22919983 26 4.9
06_02_0074 - 11461300-11461681,11461744-11462009 26 4.9
06_01_0695 - 5068439-5068852 26 4.9
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 25 6.5
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920... 25 8.6
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 25 8.6
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 25 8.6
>10_07_0100 + 12861588-12862601
Length = 337
Score = 25.0 bits (52), Expect(2) = 2.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 133 PSCTISIPELSCSVRPANGQSCTIFRP 53
P+C+ PE +CS P + S RP
Sbjct: 186 PACSPDYPEPACSTAPPSSSSSYARRP 212
Score = 20.6 bits (41), Expect(2) = 2.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 58 RPERSSLLQPLDLNGQV 8
RP RS ++ LD++G+V
Sbjct: 231 RPSRSRTVRFLDIDGKV 247
>01_06_1160 -
34996840-34996979,34997316-34997478,34997970-34998388,
34998413-34998620
Length = 309
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -3
Query: 182 GRCYNPSMNTIWLTALTKLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSLL 3
G C N M T + ++ + A R R ++++NL+ A + SRP+R+S +
Sbjct: 236 GNCVNGLMQK---TGMREIIAAYHAATNLRHVRDESLVFNLAAAASSFALPSRPQRASAI 292
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/55 (21%), Positives = 21/55 (38%)
Frame = -3
Query: 170 NPSMNTIWLTALTKLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSL 6
+PS W +L ++ F P R+ + S ++ SRP R +
Sbjct: 253 SPSPRNAWRESLDRIEPSRKSVDCFEPSRRSVDFFEPSRKSTDRREKSRPTRDRM 307
>07_03_0253 + 15853307-15855220
Length = 637
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 62 DCTRLSVCGADGTGELGNADRAAW 133
D RLSV G DG GE+G W
Sbjct: 99 DGERLSVPGGDGGGEVGGGLEIEW 122
>12_02_0762 - 22915841-22916473,22917044-22917057,22918945-22919983
Length = 561
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 215 RIKPLSLFSHGGRCYNPSMNTIWLTA-LTKLHDQHSRALLFRPPRKRTVLYNLSTRAVKS 39
+++ +S++ GG + ++ + + K+ D+H+ + RP +L +L + S
Sbjct: 415 QLEKISVWGMGGIGKTTLIQNVYRSEKVKKMFDKHACVTIMRPFNLNDLLMSLVRQLEDS 474
Query: 38 STTSRPERSSLL 3
T+ E +S+L
Sbjct: 475 KTSGEKELASIL 486
>06_02_0074 - 11461300-11461681,11461744-11462009
Length = 215
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 18 FRSRGCRRLDRSGRKIVQDCPFAGRTEQESSG 113
+R RGCRR R GR+ V + + T ++ G
Sbjct: 122 WRRRGCRRRCRWGRRTVTEKAYKVATAGDTEG 153
>06_01_0695 - 5068439-5068852
Length = 137
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 110 RALLFRPPRKRTVLYNLSTRAVKSSTTS 27
RA+LFR PR+R + S A S+ T+
Sbjct: 11 RAILFRMPRRRAASASASASASASTATA 38
>10_08_0141 + 15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 39 RLDRSGRKIVQ--DCPFAGRTEQESSGMLIVQLG*GCQPNSIHTRV 170
+L RS R++V +CP AG T + S L + GC +I R+
Sbjct: 953 QLVRSRRRLVVSGECPVAGETNRWSRFRLQFPVPDGCDLKAIQARL 998
>11_03_0044 -
9198016-9199143,9199579-9199674,9199771-9199846,
9200330-9200547,9200703-9200918,9201336-9201521,
9201607-9201708,9201828-9202495,9203248-9203314
Length = 918
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = -3
Query: 215 RIKPLSLFSHGGRCYNPSMNTIWLTALTKLHDQHSRALLFRPPRKRTVLYNLSTRAVKSS 36
R++ +L HG + +PSM ++ + K+ + + P V+ + STR + +
Sbjct: 46 RVRNSNLKCHGTKMRSPSMVSMSQSQRIKIPSYVGLSTVHTPALLTPVISSRSTRTFQKT 105
Query: 35 TTSRPERS 12
+ ERS
Sbjct: 106 AKTIQERS 113
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 203 LSLFSHGGRCYNPSMNTIWL 144
+S FSH GR +P IWL
Sbjct: 300 VSRFSHKGRIQSPKDGAIWL 319
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 139 P*PSCTISIPELSCSVRPANGQSCTIFRPERSSLLQPLDL 20
P PS + P S N S F+P R SLL P L
Sbjct: 721 PSPSPSPRTPTRDASPGQVNQDSSQEFQPRRISLLAPFSL 760
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,629,244
Number of Sequences: 37544
Number of extensions: 113719
Number of successful extensions: 271
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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