Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f10
(235 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC131633-1|AAI31634.1| 730|Homo sapiens WDR27 protein protein. 28 4.6
BC014001-1|AAH14001.2| 445|Homo sapiens UBX domain containing 8... 28 6.1
BC006145-1|AAH06145.2| 445|Homo sapiens UBX domain containing 8... 28 6.1
BC001069-1|AAH01069.2| 445|Homo sapiens UBX domain containing 8... 28 6.1
AB088120-1|BAC22491.1| 445|Homo sapiens ETEA protein. 28 6.1
AB020694-1|BAA74910.1| 443|Homo sapiens KIAA0887 protein protein. 28 6.1
BC009016-1|AAH09016.1| 245|Homo sapiens C1QC protein protein. 27 8.1
AL158086-3|CAI22894.1| 245|Homo sapiens complement component 1,... 27 8.1
AK057792-1|BAB71575.1| 245|Homo sapiens protein ( Homo sapiens ... 27 8.1
AF137396-5|AAG41679.1| 314|Homo sapiens HOR5'Beta11 protein. 27 8.1
AF087892-1|AAP97191.1| 245|Homo sapiens C1q-C protein. 27 8.1
>BC131633-1|AAI31634.1| 730|Homo sapiens WDR27 protein protein.
Length = 730
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -3
Query: 152 IWLTALTKLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSL 6
+W+ +L H H R + RK+T + STR VKS S+PE S L
Sbjct: 135 LWIFSLMDGH--HYRRVARVDLRKKTETF--STRRVKSGLCSQPEESQL 179
>BC014001-1|AAH14001.2| 445|Homo sapiens UBX domain containing 8
protein.
Length = 445
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 131 KLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSLL 3
+L++Q +F PP R + N + + S SRP+ LL
Sbjct: 50 RLNEQEGVPSVFNPPPSRPLQVNTADHRIYSYVVSRPQPRGLL 92
>BC006145-1|AAH06145.2| 445|Homo sapiens UBX domain containing 8
protein.
Length = 445
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 131 KLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSLL 3
+L++Q +F PP R + N + + S SRP+ LL
Sbjct: 50 RLNEQEGVPSVFNPPPSRPLQVNTADHRIYSYVVSRPQPRGLL 92
>BC001069-1|AAH01069.2| 445|Homo sapiens UBX domain containing 8
protein.
Length = 445
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 131 KLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSLL 3
+L++Q +F PP R + N + + S SRP+ LL
Sbjct: 50 RLNEQEGVPSVFNPPPSRPLQVNTADHRIYSYVVSRPQPRGLL 92
>AB088120-1|BAC22491.1| 445|Homo sapiens ETEA protein.
Length = 445
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 131 KLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSLL 3
+L++Q +F PP R + N + + S SRP+ LL
Sbjct: 50 RLNEQEGVPSVFNPPPSRPLQVNTADHRIYSYVVSRPQPRGLL 92
>AB020694-1|BAA74910.1| 443|Homo sapiens KIAA0887 protein protein.
Length = 443
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 131 KLHDQHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPERSSLL 3
+L++Q +F PP R + N + + S SRP+ LL
Sbjct: 48 RLNEQEGVPSVFNPPPSRPLQVNTADHRIYSYVVSRPQPRGLL 90
>BC009016-1|AAH09016.1| 245|Homo sapiens C1QC protein protein.
Length = 245
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 33 CRRLDRSGRKIVQDCPFAGRTEQESSGMLIVQL 131
C L RSG K+V C +T Q +SG ++++L
Sbjct: 179 CVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRL 211
>AL158086-3|CAI22894.1| 245|Homo sapiens complement component 1, q
subcomponent, C chain protein.
Length = 245
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 33 CRRLDRSGRKIVQDCPFAGRTEQESSGMLIVQL 131
C L RSG K+V C +T Q +SG ++++L
Sbjct: 179 CVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRL 211
>AK057792-1|BAB71575.1| 245|Homo sapiens protein ( Homo sapiens
cDNA FLJ25063 fis, clone CBL04869, highly similar to
COMPLEMENT C1Q SUBCOMPONENT, C CHAIN PRECURSOR. ).
Length = 245
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 33 CRRLDRSGRKIVQDCPFAGRTEQESSGMLIVQL 131
C L RSG K+V C +T Q +SG ++++L
Sbjct: 179 CVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRL 211
>AF137396-5|AAG41679.1| 314|Homo sapiens HOR5'Beta11 protein.
Length = 314
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -3
Query: 161 MNTIWLTALTKLHDQHSRALLFRPPRKRTVLYNLSTRAVK 42
++ W +A +H S LF PP ++Y++ T+ ++
Sbjct: 263 IHRFWKSAPPVVHVMMSNVYLFVPPMLNPIIYSVKTKEIR 302
>AF087892-1|AAP97191.1| 245|Homo sapiens C1q-C protein.
Length = 245
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 33 CRRLDRSGRKIVQDCPFAGRTEQESSGMLIVQL 131
C L RSG K+V C +T Q +SG ++++L
Sbjct: 179 CVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRL 211
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,655,944
Number of Sequences: 237096
Number of extensions: 576141
Number of successful extensions: 1252
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 76,859,062
effective HSP length: 56
effective length of database: 63,581,686
effective search space used: 1335215406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -