Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f10
         (235 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   3.5  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              20   4.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   8.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 167 PSMNTIWLTALTKLHDQHSRALLFRPP 87
           P+  T+ +T+L  L  QH+++    PP
Sbjct: 274 PARVTLGVTSLLTLSTQHAKSQASLPP 300


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = -3

Query: 167 PSMNTIWLTALTKLH 123
           P  NT+W+  +  +H
Sbjct: 563 PFSNTLWILVMVSVH 577


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 130 SCTISIPELSCSVRPA 83
           +C I  P + C  RP+
Sbjct: 12  TCLICSPSVHCGTRPS 27


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 173 YNPSMNTIWLTALTKLHDQHSRALLFRPP 87
           YN +     +T +TK    H+  ++++PP
Sbjct: 110 YNNADGNYEVTIMTKAILHHTGKVVWKPP 138


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 209 KPLSLFSHGGRCYNPSMNTIWLTAL 135
           +PL  F  GG  +N + +  WL  +
Sbjct: 670 RPLPEFYIGGNPFNCNCSMDWLPGI 694


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 119 QHSRALLFRPPRKRTVLYNLSTRAVKSSTTSRPER 15
           QH  +L  R   +  ++++ ++    SST+S   R
Sbjct: 730 QHRDSLSPRVENRSAIVHSEASANANSSTSSEESR 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,271
Number of Sequences: 438
Number of extensions: 1197
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3772710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)