Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f09
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 35 0.064
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 34 0.11
11_06_0610 - 25449085-25453284 32 0.59
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 32 0.59
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.59
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.79
02_02_0691 + 12999452-12999820 31 1.0
02_01_0302 - 2021221-2023305 31 1.0
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 31 1.4
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 30 1.8
03_02_0253 - 6839543-6839623,6839725-6839805,6839935-6839976,684... 30 2.4
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757 29 3.2
02_04_0452 + 23044190-23045227 29 3.2
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 29 3.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
05_03_0458 + 14280953-14281866,14281964-14282912 29 5.5
04_04_1125 + 31085106-31085714 29 5.5
08_02_0875 + 22103903-22106293 28 7.3
03_01_0131 - 1013982-1016246 28 7.3
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 28 7.3
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521 28 9.7
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 9.7
05_01_0493 + 4113869-4116728,4116859-4117370 28 9.7
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 28 9.7
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.7
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 35.1 bits (77), Expect = 0.064
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -1
Query: 637 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPYQKEFAPGLKPPLSSEAPSAY 467
P SP+ S TS + S ++PT+P TS +P +P +P P PS
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820
Query: 466 LTPSSLGMAKGVSPPY 419
+PSS SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -1
Query: 637 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPYQKEFAPGLKPPLSSEAPSAY 467
P SP+ S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758
Query: 466 LTPSS--LGMAKGVSPPY 419
+PSS L SP Y
Sbjct: 1759 YSPSSPRLSPYSQTSPNY 1776
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPYQKEFAPGLKPPLSSE 482
PP+P A+S P HTP+ P+ T S +P TP K +P PP + E
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPLTPYQKEFAPGLKPPLSSE 482
PP+P A+S P HTP+ P T +P TP + +P PP + E
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP---PPPAPE 700
Score = 27.9 bits (59), Expect = 9.7
Identities = 24/84 (28%), Positives = 28/84 (33%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTP 458
PPSP S+ S P H + P S S P P PP LTP
Sbjct: 832 PPSPVKSS----SPPPEAHVSSPPPEKSSSPPPEAHVSSPPPPEKSPPPPETKSPPTLTP 887
Query: 457 SSLGMAKGVSPPYFQVNDESQASR 386
+G SPP S S+
Sbjct: 888 EISPPPEGKSPPSHTPESSSPPSK 911
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Frame = -1
Query: 637 PPSPAISATSTRSSN---PRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAY 467
PP +S+ S+ P H + P P T P + PP ++P ++
Sbjct: 842 PPEAHVSSPPPEKSSSPPPEAHVSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPSH 901
Query: 466 LTPSSLGMAKGVSPP 422
SS +K PP
Sbjct: 902 TPESSSPPSKESEPP 916
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/72 (29%), Positives = 27/72 (37%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTP 458
PP+P + + RF T +TPD ++ P Q AP PP P P
Sbjct: 307 PPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPP--PP 364
Query: 457 SSLGMAKGVSPP 422
L A PP
Sbjct: 365 PKLNTAPKPPPP 376
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.59
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -1
Query: 643 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 530
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1
Query: 625 AISATSTRSSNPRFHTPTTP 566
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>02_02_0691 + 12999452-12999820
Length = 122
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/84 (32%), Positives = 31/84 (36%)
Frame = +3
Query: 423 GGETPLAMPSDEGVRYADGASDDNGGFNPGANSF*YGVRGLMEMDVKSGVVGVWNRGFDD 602
G E P+ P G R A G+ G P A G RG E +S G
Sbjct: 11 GSEAPVVAPKPRGWRMAVGSIGGGGISPPVARG---GRRGERERGRRSA-----GGGLTG 62
Query: 603 RVDVAEIAGEGGLMHKGETANSNA 674
VD AGE G H G A + A
Sbjct: 63 AVDAFRPAGEAGRQHAGAAAAAEA 86
>02_01_0302 - 2021221-2023305
Length = 694
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTS--ISINPLTPYQKE-----FA--PGLKPPLSSE 482
PSP S+T+ S +P TPT P S ++ P P + FA PG P+ S
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPST 578
Query: 481 APSAYLTPSSLGMAKGVSPP 422
PS+ PS + G PP
Sbjct: 579 PPSSGSPPSP---SSGYQPP 595
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPT---TPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAY 467
PPSP+I + T +TPT TP S +P TP + P + +PS+
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTP-GGGCSSSPTPCDAPPSPSSD 163
Query: 466 LTPSSLGMAKGVSP 425
+P++ G G SP
Sbjct: 164 TSPTTPGGGGGYSP 177
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -1
Query: 646 CIKPPSPAISATSTRSSNPRFHTPT---TPDLTSISINPLTP-YQKEFAPGLKPPLSSEA 479
C PPSP+ + T ++PT TP S +P TP + P P + +
Sbjct: 154 CDAPPSPSSDTSPTTPGGGGGYSPTPSDTPPSPSSDTSPTTPGGGGGYTP--TPSDAPPS 211
Query: 478 PSAYLTPSSLGMAKGVSP 425
PS+ +P++ G G +P
Sbjct: 212 PSSDTSPTTPGGGGGYTP 229
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 577 PTTPDLTSISINPLTPYQKEFAPGLKPPL 491
P TP SI+ P PYQK P L+PPL
Sbjct: 294 PQTPPRPSIASIP--PYQKPLKPSLRPPL 320
>03_02_0253 -
6839543-6839623,6839725-6839805,6839935-6839976,
6840604-6840695,6840789-6840858,6841645-6841737,
6841926-6842002,6842614-6842800
Length = 240
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 692 ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVSEG-I 516
+TP +R I G + H AT+ L N +KS + ++FH+ PD V E I
Sbjct: 132 STPEEARKFIKGYSESHAATIGSVL-VTN--VKSGARKEGWDKAEVYFHKIPDEVVESLI 188
Query: 515 RAGVKASVVIRGSISVSHPLVT 450
G + G + V HPL +
Sbjct: 189 EEG--DVFYVAGGLLVEHPLTS 208
>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
Length = 397
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTP 458
PP P+ SATS S+ PTT +S + + P + AP A + TP
Sbjct: 139 PPPPSSSATSAASNTSAGVAPTTTTTSSPAPSYSRPAPHDAAPYQALYGGPYAAATARTP 198
Query: 457 SSLGMAKGVSPPYFQVN 407
++ VSP + Q++
Sbjct: 199 AAAAYHAQVSPFHLQLD 215
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 690 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 568
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAP 509
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 4 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 150
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -1
Query: 637 PPSPAISAT-STRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLT 461
PPS +A S SSN + TTP + +P +P PPL P L
Sbjct: 22 PPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQPTPPP--LP 79
Query: 460 PSSLGMAKGVSPP 422
P++L + +PP
Sbjct: 80 PTTLSCSSHPTPP 92
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPG--LKPPLSSEAPS 473
P+PA T P TPT P T + P TP P PP + APS
Sbjct: 51 PTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAPS 106
>08_02_0875 + 22103903-22106293
Length = 796
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAP 509
P+P ++A S R NP+ PDL + +N L + P
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGP 547
>03_01_0131 - 1013982-1016246
Length = 754
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY-----QKEFAPGLKPPLSSEAPSA 470
P+P+++ S+R N PD+T +N L + EFA G+ E+ ++
Sbjct: 479 PAPSVAFFSSRGPNKASPGVLKPDITGPGMNILAAWAPGEMHTEFADGVSLSFFMESGTS 538
Query: 469 YLTPSSLGMA 440
TP G+A
Sbjct: 539 MSTPHLSGIA 548
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 761 KIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ 639
K+ V +D TAD+++ +N+L P G L+HQ
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQ 249
>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
Length = 481
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = -1
Query: 640 KPPSPAISATSTRSSNPRFHTPT-TPDLTSISIN--PLT-PYQKEFAPGLKPPLSSEAPS 473
+ PSP IS + ++P+ HT T + TSI+ + P+T P+Q PL+ + +
Sbjct: 253 RKPSPKISRHQKKKTSPKGHTAEGTMNFTSIAPSQVPITQPFQVPVTQPSHIPLTQPSQT 312
Query: 472 AYLTPSSLGMAKGVSPPY 419
+ T + M + + P+
Sbjct: 313 SQATVTQHYMGEDENFPF 330
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLT 557
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 174 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 31
+PP+D LY + + D +L A++ S E+YR + S V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 631 SPAISATSTRSSNPRFHTPTTPDLTSI-SINPLTPYQKEFAPGLKPPLSSE 482
+PA + + ++NP + P TP + ++ S NP T Y P L PPL E
Sbjct: 253 TPATNPVTVPATNPAMN-PVTPGIVTVPSTNPATGYSNN--PNL-PPLYPE 299
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 372 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 283
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,568,247
Number of Sequences: 37544
Number of extensions: 510928
Number of successful extensions: 1808
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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