Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f09
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 34 0.10
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 32 0.53
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.53
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 32 0.53
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 31 1.2
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 30 1.6
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 30 2.2
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 29 2.9
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 29 5.0
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 29 5.0
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 29 5.0
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 29 5.0
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 29 5.0
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 28 8.7
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 8.7
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 8.7
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQ---KEFAPGLKPPLSSEAPSAYL 464
P+P + T+T +NP TPTT + +I +P P AP + P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAP-VNPTSSTTAPTAPV 546
Query: 463 TPSSLGMAKGVSP 425
P+S A V P
Sbjct: 547 NPTSPTTAPTVPP 559
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 637 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPYQKEFAPGLKPPLSSEAPSAY 467
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 466 LTPSSLGMAKGVSPPY 419
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.9 bits (69), Expect = 0.53
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPS 455
P+P + T+T +NP TPTT TS N ++P+ + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 454 SLGMAKGVSPP 422
+ S P
Sbjct: 549 TTPTHTTASQP 559
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 637 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPYQKEFAPGLKPPLSSEAPSAY 467
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 466 LTPSSLGMAKGVSPPY 419
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAP-GLKPPLSSEAPSAYLT 461
P S I++TS+ S+ P + T T + + E ++ SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754
Query: 460 PSSLGMAKGVSPPYFQVNDESQAS 389
P +G VS Q + S +S
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSS 778
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 651 PYASSHPPLRSRLHQPDHQIPDS 583
P +S HPPL S H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAP-SAYLTP 458
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 457 SSLGMAKGVSPPYFQVNDESQASRLISR 374
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAP-SAYLTP 458
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 457 SSLGMAKGVSPPYFQVNDESQASRLISR 374
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 643 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFA-PGLKPPLSSEAP 476
+ PP PA +A + + P + + ++NP TP + P PPLSS P
Sbjct: 166 VPPPPPAATAAVSMNGGGPGSAPGSAHSVNNNVNPGTPGSNPLSNPMSNPPLSSGPP 222
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 640 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQK 521
KPP+P+ T N + P++P T S PLT +K
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLTFIEK 140
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 634 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPS 473
P+ S ++ + P T TP+LT++++ P+T K + P +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -1
Query: 640 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLT 461
+PP P +A S S P T + T + PYQ++ P ++ + P Y
Sbjct: 372 RPPPPRPAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQ--FQQHPGYYQQ 429
Query: 460 PSSLGMAKGVSPPYFQ 413
P G + + P +Q
Sbjct: 430 PMPYGQPQPMFQPQYQ 445
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -1
Query: 640 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLT 461
+PP P +A S S P T + T + PYQ++ P ++ + P Y
Sbjct: 756 RPPPPRPAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQ--FQQHPGYYQQ 813
Query: 460 PSSLGMAKGVSPPYFQ 413
P G + + P +Q
Sbjct: 814 PMPYGQPQPMFQPQYQ 829
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -1
Query: 640 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLT 461
+PP P +A S S P T + T + PYQ++ P ++ + P Y
Sbjct: 735 RPPPPRPAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQ--FQQHPGYYQQ 792
Query: 460 PSSLGMAKGVSPPYFQ 413
P G + + P +Q
Sbjct: 793 PMPYGQPQPMFQPQYQ 808
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -1
Query: 640 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLT 461
+PP P +A S S P T + T + PYQ++ P ++ + P Y
Sbjct: 735 RPPPPRPAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQ--FQQHPGYYQQ 792
Query: 460 PSSLGMAKGVSPPYFQ 413
P G + + P +Q
Sbjct: 793 PMPYGQPQPMFQPQYQ 808
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -1
Query: 637 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTP 458
PP+ +SA ST SS+ +TP S S+ T +K KPP + AP+ L+
Sbjct: 810 PPNKMVSAASTPSSS------STPGPASTSVGRFTNLKKIPKLSEKPPQAEFAPALGLSQ 863
Query: 457 SS 452
S
Sbjct: 864 KS 865
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.0
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +3
Query: 435 PLAMPSDEGVRYADGASDDNGG-FNPG-ANSF*YGVRGLMEMDVKSGVVGVWNRGFDDRV 608
P P D G G +G PG A G GL D G G G D V
Sbjct: 133 PPGSPGDHGSPGEPGYPGPSGPPGEPGYATIGLIGPPGLAGQDGLDGAPGEPGVGGMDAV 192
Query: 609 DVAEIAGEGGLMHKGETANSNARG*RGG 692
+ + G+ G +GE N ++G RGG
Sbjct: 193 KIVSVDGKIG--RRGEAGNKGSKGSRGG 218
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 643 IKPPSPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 530
+ SPAI +T+T +++P+ T TP+ +T++ + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 622 ISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSSLGM 443
+S +STR+++ + +TP T+ +I P P E + +K + E A P+ M
Sbjct: 528 LSHSSTRTADTIAASTSTPPSTTSNITPSRPTTSEQSNTIKRKTAFEKEDA--PPAKRSM 585
Query: 442 AKGVSPPYF 416
A YF
Sbjct: 586 ATSTDDAYF 594
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 599 IKSPIPYTNHPRLNIHFHQSPDAVSE 522
I SP Y+N PR FH+ P+A+S+
Sbjct: 111 IPSPPTYSNQPRPLGDFHRDPNALSQ 136
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 496 PLSSEAPSAYLTPSSLGMAKGVSPP 422
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 496 PLSSEAPSAYLTPSSLGMAKGVSPP 422
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,679,304
Number of Sequences: 27780
Number of extensions: 375318
Number of successful extensions: 1509
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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