Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f06
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 51 2e-07
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.053
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 31 0.28
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 30 0.37
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 29 0.65
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 27 2.6
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 3.5
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 3.5
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 26 6.1
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 6.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.1
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 6.1
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 26 8.0
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 50.8 bits (116), Expect = 2e-07
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = -2
Query: 830 KRHSRLEIGYFLSKMLRKYGADTVEKLIPKTDEVMLRRFRNIRKMDNRKKRLKERNADQD 651
K + R+++ + KM RKYG +E P D+ ++ R ++ + RK+ +K A
Sbjct: 921 KANLRVKVRHLFEKMGRKYGIAEIEPFFPAEDKKLITNIRKTQERNIRKRAMKRDPAKPS 980
Query: 650 SESETETPIKGTSNTLEDILKXXXXXXXXXXXXVAPKPKAKKTRSQAWIQDD-PENIVDL 474
S +T + D + +A++Q+D E +DL
Sbjct: 981 SAQPRKTFASAYEAAVYDTDDEAEEEFENDEMNNGNGGDLR--MDEAFVQEDNDEEPLDL 1038
Query: 473 ADVSASRKITATNPRSDQRTTELKTQRSK-DGGFRTAPDGRLIIS 342
D+ A KI++T+PR +L ++ K + F++ +GRL+I+
Sbjct: 1039 LDIEAVSKISSTDPRK-----KLAARKQKLNSAFKSNEEGRLLIN 1078
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 33.1 bits (72), Expect = 0.053
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 484 SSIWPTCQPAGKSLLRTRGATRERLS*RRSGVKTAGSG-RPRTADSSSATRPSMMTTTNR 308
SS Q S+ T E ++ + TA G RP T+ S++ T P+ TN+
Sbjct: 193 SSYSSKSQSVNSSVTSNPPHTEEPVAAKPEASSTATKGPRPTTSASNTNTSPANGAPTNK 252
Query: 307 SPAATLTRTPMTQTTKPKAAS 245
T P TQTT+ A++
Sbjct: 253 PSTDINTTDPATQTTQVSASN 273
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 30.7 bits (66), Expect = 0.28
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 707 IRKMDNRKKRLKERNA---DQDSESETETPIKGTSNTLEDILK 588
++K DN+K LKE NA + D +SE E +K + L++I K
Sbjct: 329 VKKEDNKKFLLKEINAKLNEDDIDSELEIEVKPKTTALDNIEK 371
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 358 ADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF 233
A + ++T+PS +T+T R AT T+T P A+S+ ++
Sbjct: 240 ASTVTSTQPSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAY 281
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 29.5 bits (63), Expect = 0.65
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 485 CSPGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSECLPG 607
C G GS+ S R P + C SPN EC PG
Sbjct: 348 CDSGASGSSASILGISFPSLCRTCPPNAICPSPNYVECKPG 388
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 20 PSS*YRPWLSSVCNHLPA*TLQTPQNLN 103
PS RP LSSV +LP + TP NLN
Sbjct: 275 PSPYSRPLLSSVHPNLPPGSQSTPANLN 302
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 530 KKTRSQAWIQDDPENIVDLADVSASRKITATNP 432
+++ +A++ ++PE IVDLAD + NP
Sbjct: 510 RESAVKAFLMNNPEGIVDLADKMTDMRGLCVNP 542
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 464 SASRKITATNPRSDQRTTELKTQRSKDGGFRTA 366
S KIT T+P T LKT+ SK G + A
Sbjct: 158 SKDEKITNTDPIPSPIITNLKTESSKSSGAKKA 190
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 719 RFRNIRKMDNRKKRLKERNADQDSESETETP 627
+F+N + +RK+ ++E N+D+D ET+ P
Sbjct: 690 QFKNKLALIDRKQ-MEETNSDEDGSKETDLP 719
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 358 ADSSSATRPSMMTTTNRSPAA----TLTRTPMTQTTKPKAAS 245
+DSSS+T ++TT+ SPA TLT +T T +S
Sbjct: 191 SDSSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSS 232
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 382 AGSGRPRTADS--SSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAAS 245
AGSG T S S+ T+P+ + T + + T TTKP A+
Sbjct: 558 AGSGSATTIPSPGSATTKPTPGSATTKPTPVSATEEHAAGTTKPAPAA 605
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 352 SSSATRPSMMTTTNRSPAATLTRTPMT 272
SS+ +RP + T+ RS A T P+T
Sbjct: 1084 SSAVSRPPIATSAGRSSTAASTSAPLT 1110
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 818 RLEIGYFLSKMLRKYGADTVEKLIP-KTDEVMLRRFRNIRKMDNRKKRLKERNADQDSE 645
+L+ L +MLR + +E +TD+ L+R +R+ KK + + DSE
Sbjct: 893 KLKAKQLLDRMLRVFSLKELEAFAENETDKEWLQRIWRVRRSRGDKKVVDNKRDASDSE 951
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -2
Query: 710 NIRKMDNRKKRLKERNADQDSESETETPIKGTSNTLEDIL 591
N+ +NR++ + N D+ E ETP +N +L
Sbjct: 124 NLNHSNNRRQTICNFNMANDASKENETPYMVLNNKFNPVL 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,139
Number of Sequences: 5004
Number of extensions: 46489
Number of successful extensions: 232
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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