Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f06
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 32 0.69
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 31 0.91
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241... 30 2.1
11_04_0443 - 17808897-17809110,17809169-17813652 30 2.8
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 29 3.7
11_01_0250 + 1924261-1924848 29 4.8
09_04_0430 + 17502387-17503505 29 4.8
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 29 4.8
05_03_0459 - 14284513-14286336 29 4.8
07_01_0608 + 4515709-4515951,4516085-4516678 29 6.4
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 29 6.4
08_01_0443 + 3930381-3930908 28 8.5
06_03_0460 + 21024729-21025102,21025599-21025917 28 8.5
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 28 8.5
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259... 28 8.5
01_06_1106 + 34563368-34563679 28 8.5
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 31.9 bits (69), Expect = 0.69
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 506 STPGCASSSLSVSARLHH--PPSPCRS---PNPSECLPGCSTCP 622
S+ +SSS S S R +H PPSP RS P P+ C CP
Sbjct: 96 SSSSSSSSSSSPSVRHYHYYPPSPTRSSSPPTPAAHTTSCPICP 139
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 31.5 bits (68), Expect = 0.91
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 560 PPSPCRSPNPSECLPGCSTC 619
PP PC P P C PGC++C
Sbjct: 91 PPPPCPPP-PPPCCPGCNSC 109
>01_06_0767 +
31823659-31823734,31823859-31823979,31824078-31824189,
31824278-31824691,31824795-31824898,31825017-31825136,
31825344-31825467,31826567-31826680,31826789-31826980,
31827328-31827424,31827505-31827653,31828729-31829013
Length = 635
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 370 VRNPPSLLRCVFSSVVLWSLLGFVAVIFLLADTSARSTMF 489
+ +PP LL +F ++LG +VIF+L D S F
Sbjct: 135 LESPPELLELIFEEATKSNILGLPSVIFVLHDLIVVSLQF 174
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 488 NIVDLADVSASRKITATNPRSDQRTTELKTQRSKDGGF--RTAPDGRL 351
NIV A S ++ TNP D++ T L G F ++ PDGRL
Sbjct: 576 NIVVPAKGSKWVRLMGTNPWKDEKYTVLAADYMSSGSFARKSTPDGRL 623
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 470 RPDRRCSPGRPGSTPGCASSSLSVSARLHH 559
RP R S P STP +SS+ S S LHH
Sbjct: 49 RPTLRSSSLPPASTPSPSSSASSSSGSLHH 78
>11_01_0250 + 1924261-1924848
Length = 195
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -3
Query: 454 GKSLLRTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPS---MMTTTNRSPAATLTR 284
G S + ++++R RRSG K+ G ++ SSS S TT RS
Sbjct: 9 GSSSSSSSSSSKKRRKKRRSGAKSCSFGSTTSSSSSSLAASSSDDSAATTPRSVLPASAA 68
Query: 283 TPMTQTTKPKAASL 242
+ T KP A ++
Sbjct: 69 ASSSGTKKPAAVAV 82
>09_04_0430 + 17502387-17503505
Length = 372
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 521 ASSSLSVSARLHHPPSPCRSPNP 589
A+++ + +AR +HPP+P + P P
Sbjct: 146 AAAAAAAAARAYHPPAPMQQPQP 168
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +2
Query: 473 PDRRCSPGRPGSTPGCASSSLSVSARLHHP-----PSPCRSPNPS 592
PD C G P +P AS + VS+ + H P P + P PS
Sbjct: 1359 PDSSCRAGSPLESPPRASKRIRVSSDIDHRGNNEFPPPLKVPEPS 1403
>05_03_0459 - 14284513-14286336
Length = 607
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 776 TSSASCSGNSLSRDENDACSHR 841
+SS+SCSG+S S + ND+ S R
Sbjct: 429 SSSSSCSGSSSSSERNDSASSR 450
>07_01_0608 + 4515709-4515951,4516085-4516678
Length = 278
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 415 RLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 257
+LS R A +P+ A AT+P + TT PAA T+ KP
Sbjct: 142 KLSSTRPAAPAAADAKPKAAP---ATKPKVKTTKAAKPAAKAKAPATTKAAKP 191
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 397 SGVKTAGSGRPRTADSSSA----TRPSMMTTTNRSPAATLTRTPMTQTTK 260
S AG GRP T SSSA T PS + +P++ TP + +++
Sbjct: 51 SSSSAAGGGRPTTPSSSSAGGRPTTPSAAFARSTTPSSGRPTTPSSASSR 100
>08_01_0443 + 3930381-3930908
Length = 175
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 482 RCSPGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSECLP 604
R + P S C LS A PP P R PN LP
Sbjct: 3 RSTTPTPASPSVCRRVRLSSGAGARSPPPPTRQPNGGGLLP 43
>06_03_0460 + 21024729-21025102,21025599-21025917
Length = 230
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 430 GATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAAT 293
G R R + GV A G A S ++ S TTT RSPA++
Sbjct: 3 GIARRRGGGDQGGVAAAAGGDGEAAASGFSSGDSSATTTLRSPASS 48
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 585 ILQNVFQGVRRALDRRLCFRFGILVRVPLLQSL 683
+L N+ + +RRA+ R LC +L+RVP+ +++
Sbjct: 483 LLMNLPKDLRRAIKRHLC--LSLLMRVPMFENM 513
>03_05_0582 +
25823862-25824459,25824915-25825063,25825691-25825960,
25826031-25826161,25826545-25826662,25826737-25826829,
25826987-25827064,25827158-25827224,25828780-25829111
Length = 611
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 488 SPGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSECLPGCSTCP 622
S P +P C +S+ +R P+P +PS+ LP + P
Sbjct: 42 SSSAPCGSPACGGTSMEEPSR-EELPAPSSRASPSQSLPAVTEAP 85
>01_06_1106 + 34563368-34563679
Length = 103
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 488 SPGRPGSTPGCASSSLSVSARLHHPPSPCRSP 583
+P RPG P S+S A L H P+ CR P
Sbjct: 31 APPRPGRVP--PSASAPPPAELRHGPNRCRRP 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,030,618
Number of Sequences: 37544
Number of extensions: 385100
Number of successful extensions: 2162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2154
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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