Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f06
         (870 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.           29   0.24 
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           29   0.24 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   3.0  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    24   5.2  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    24   6.9  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.2  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   9.2  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    23   9.2  

>AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 385 TAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTT 263
           T+G   P T   + AT     TTT  +P  T T  P T TT
Sbjct: 18  TSGQIDPPTTTVAPATTTVAPTTTTVAPTTTTTVAPTTTTT 58


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 385 TAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTT 263
           T+G   P T   + AT     TTT  +P  T T  P T TT
Sbjct: 18  TSGQIDPPTTTVAPATTTVAPTTTTVAPTTTTTVAPTTTTT 58


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 433  RGATRERLS*RRSGVKTAGSGRPRTADSSSATR 335
            R AT  R   RR+G+       PRTA   +A R
Sbjct: 1116 RAATARRREERRAGLPPTPPASPRTAQRRAALR 1148


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 491 PGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSECLPGC 610
           PGR     G  +S L  + ++   P P      S+   GC
Sbjct: 206 PGRKAGQVGAPASRLDGNVQVREAPGPGEKARRSDPAAGC 245


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 376 SGRPRTADSSSATRPSMMTTTNRS 305
           SG P TA SSS+T  +    +NR+
Sbjct: 193 SGNPSTAVSSSSTNNNTSNISNRN 216


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 24/120 (20%), Positives = 41/120 (34%)
 Frame = -2

Query: 707  IRKMDNRKKRLKERNADQDSESETETPIKGTSNTLEDILKXXXXXXXXXXXXVAPKPKAK 528
            IR+   R  RL   N D+  E + + P+      L D+L+             A    A 
Sbjct: 1166 IRRQVARDLRLGWENVDELQEGQFQWPMLSFGWNLADVLR-KTKEQKIAQAQEAIDASAP 1224

Query: 527  KTRSQAWIQDDPENIVDLADVSASRKITATNPRSDQRTTELKTQRSKDGGFRTAPDGRLI 348
            +   +  +  +  N+ D A+V     +   N    +            G  +T  DG L+
Sbjct: 1225 EVEDEVELDKEAPNVRDAAEVDEEDGLKMENGVIAEVEKSQVDGEDDTGDKKTDSDGTLL 1284


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 783  EEVRSGHGGEADTENRRG 730
            E+ R G GG++D+E   G
Sbjct: 959  EKARRGSGGDSDSEEEEG 976


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -2

Query: 539 PKAKKTRSQAWIQDDPENIVDLADVSASRKITATNPRSDQRTTELKTQRSKDGGFRTAPD 360
           PK  ++ +       P+N V L D++     + T   SD   +E +   S DGG+   P 
Sbjct: 272 PKIIRSLNNRAFPPRPQNTV-LRDINRVDD-SVTFTVSDLERSESRIAESIDGGYVVGPG 329

Query: 359 GRLI 348
           G  I
Sbjct: 330 GNRI 333


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,298
Number of Sequences: 2352
Number of extensions: 13209
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93026475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)