Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11f06
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ... 47 2e-05
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 35 0.087
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z66500-4|CAA91305.2| 630|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 30 2.5
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 2.5
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 30 2.5
Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 3.3
U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical p... 29 4.3
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 29 4.3
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 29 4.3
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 5.7
U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical pr... 29 5.7
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 5.7
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical pr... 28 7.5
U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 28 7.5
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 28 7.5
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical pr... 28 10.0
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 28 10.0
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 28 10.0
AL110484-21|CAB54413.1| 234|Caenorhabditis elegans Hypothetical... 28 10.0
AC024755-2|AAL65800.1| 498|Caenorhabditis elegans Hypothetical ... 28 10.0
>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
protein Y46E12BL.2 protein.
Length = 1334
Score = 47.2 bits (107), Expect = 2e-05
Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 14/258 (5%)
Frame = -2
Query: 797 LSKMLRKYGADTVEKLIPKTDEVMLRRFRNIRKMDNRKKR----LKERNADQDSESETE- 633
L ++ K+G + ++K K D L++ +NI K+ RK R + + D+D S
Sbjct: 1023 LEVLVEKFGVNVLQKYTEKPD--WLKQMKNIEKIRKRKVRKAGEAEMEHDDEDGASAISG 1080
Query: 632 TPIKGTSNTLEDILKXXXXXXXXXXXXVAPKPKAKKTRSQAWIQDDPENIVDLADVSASR 453
+ + G + + IL+ + K W++++ + V + + +SR
Sbjct: 1081 SNVSGRTAGADTILELLEDSDADNESDSEEQLMKKSRVGSVWLKNESDGDVPMDLLDSSR 1140
Query: 452 ---KITATNPRS-DQRTTELKTQRSK-DGGFRTAPDGRLIISXXXXXXXXXXXXXXXXXX 288
+IT NP ++R + +R K + GF+ + DG++I+
Sbjct: 1141 MMDQITTMNPAILEKRKKKALERRQKVEAGFQFSKDGKMIVLGDDEEDEDKKQIGKRKMR 1200
Query: 287 XXXXXXDNETQGGK--PSKLLKAGTKRR--YDDILSIRSGRSNRSRASTATVGSKYKTGG 120
++ + + P+K K + D+ILS + A T + GG
Sbjct: 1201 SGYDGLGDDDEDDEDGPTKGKKRVKENSDSEDEILSDDDDDDDEKDAKTFVSRAAPSYGG 1260
Query: 119 KGIHRNLDSAASVASTLG 66
KGI+R+ + V S++G
Sbjct: 1261 KGIYRDTSGKSQVGSSVG 1278
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 34.7 bits (76), Expect = 0.087
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3
Query: 367 PRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAAS 245
PR S + T P+ TTT + AT T P T PKAAS
Sbjct: 344 PRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAAS 384
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 367 PRTADSSSAT-RPSMMTTTNRSPAATLTRTPMTQTTKP 257
P T +++ T +P+ TTT +PA T T+ P T TT P
Sbjct: 419 PTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTP 456
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 424 TRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATL----TRTPMTQTTKP 257
T ER+S + T + +P T S++ RP + TT T+ TR P T+ +
Sbjct: 292 TTERMSPSTTKTSTTTTAKPTTTRSTTTQRPQTVATTEAPTTTTVEDVTTRAPRTECERR 351
Query: 256 KAASLRS 236
+A++ S
Sbjct: 352 RASASSS 358
>Z66500-4|CAA91305.2| 630|Caenorhabditis elegans Hypothetical
protein T05C12.4 protein.
Length = 630
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -3
Query: 388 KTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF 233
+T + PRT +++ T + +TTT +P T TP++ T+K +S + F
Sbjct: 327 ETTSTTTPRTTTTTTTT--TTITTTTSAPTTIATSTPISTTSKATTSSTQLF 376
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 31.5 bits (68), Expect = 0.81
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -3
Query: 436 TRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 257
TR A+ + R V + PR S + P+ TTT + AT T P T P
Sbjct: 301 TRSASTTGAARTRPAVPAVSA--PRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPP 358
Query: 256 KAA 248
KAA
Sbjct: 359 KAA 361
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 346 SATRPSMMTTTNRSPAATLTRTPMTQTTKP 257
S +PS TTT +P T T TP T TT P
Sbjct: 81 SKPKPSTTTTTTTTPTTT-TTTPTTTTTTP 109
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 430 GATRERLS*RRSGVKT--AGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQT 266
G+T S SGV T A SG+P+ + S ++ S + ++ SPAA+ T T T
Sbjct: 1714 GSTVTMGSSSTSGVSTSSASSGQPQMSTSQGSSAGSTVVSSTASPAASSTAPSSTGT 1770
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 385 TAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMT---QTTKPKAAS 245
T+GS P T + S +T P + TTT + T+TP T T+P S
Sbjct: 1269 TSGSSTP-TPNPSQSTSPVVSTTTGEMTSHGSTQTPSTIGSTVTQPSTVS 1317
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 352 SSSATRPSMMTTTNRSPAATLTRTPMTQTTKPK 254
S T ++ TTT R T TP T TT+P+
Sbjct: 354 SPPTTTTTLQTTTTRPQTTKTTTTPQTTTTRPQ 386
>Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical
protein F31B9.4 protein.
Length = 181
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 349 SSATRPSMMTTTNRSPAATLTRTPMTQTTKP 257
++ RP+ TTT SPA +T T T T P
Sbjct: 20 TTTIRPNSTTTTTTSPAPNITTTTTTTTIAP 50
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 472 PTCQPAGKSLLRTRGATRERLS*RRSGVKTAGS-GRPRTADSSSATRPSMMTTTNRSPAA 296
PT + T T + + S V T GS P+++ + S+T S TTT +PA
Sbjct: 796 PTTGTTSGAASTTGSITSTQQATSTSSVITTGSTSAPQSSTAVSSTTTSPSTTTGSTPAP 855
Query: 295 TLTRTPMTQTTKP 257
+ T T P
Sbjct: 856 QSSTVASTTTVSP 868
>U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical
protein C23H3.9a protein.
Length = 503
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 439 RTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTK 260
RT T R+S ++ KT+ T +++++T TTT + T T P T TT+
Sbjct: 179 RTAWPTYNRISAEKALQKTS-----TTQETTTSTTAQPTTTTTATTTTTTTPLPTTTTTQ 233
Query: 259 P 257
P
Sbjct: 234 P 234
Score = 27.9 bits (59), Expect = 10.0
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 475 WPTCQ--PAGKSLLRTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSP 302
WPT A K+L +T T+E + TA TA +++ T P TTT +
Sbjct: 182 WPTYNRISAEKALQKT-STTQETTT-----STTAQPTTTTTATTTTTTTPLPTTTTTQPT 235
Query: 301 AATLTRTPMTQTTKP 257
T T T TT+P
Sbjct: 236 TTTTEPTTTTTTTEP 250
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 439 RTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTK 260
RT T R+S ++ KT+ T +++++T TTT + T T P T TT+
Sbjct: 175 RTAWPTYNRISAEKALQKTS-----TTQETTTSTTAQPTTTTTATTTTTTTPLPTTTTTQ 229
Query: 259 P 257
P
Sbjct: 230 P 230
Score = 27.9 bits (59), Expect = 10.0
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 475 WPTCQ--PAGKSLLRTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSP 302
WPT A K+L +T T+E + TA TA +++ T P TTT +
Sbjct: 178 WPTYNRISAEKALQKT-STTQETTT-----STTAQPTTTTTATTTTTTTPLPTTTTTQPT 231
Query: 301 AATLTRTPMTQTTKP 257
T T T TT+P
Sbjct: 232 TTTTEPTTTTTTTEP 246
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 439 RTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTK 260
RT T R+S ++ KT+ T +++++T TTT + T T P T TT+
Sbjct: 118 RTAWPTYNRISAEKALQKTS-----TTQETTTSTTAQPTTTTTATTTTTTTPLPTTTTTQ 172
Query: 259 P 257
P
Sbjct: 173 P 173
Score = 27.9 bits (59), Expect = 10.0
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 475 WPTCQ--PAGKSLLRTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSP 302
WPT A K+L +T T+E + TA TA +++ T P TTT +
Sbjct: 121 WPTYNRISAEKALQKT-STTQETTT-----STTAQPTTTTTATTTTTTTPLPTTTTTQPT 174
Query: 301 AATLTRTPMTQTTKP 257
T T T TT+P
Sbjct: 175 TTTTEPTTTTTTTEP 189
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +2
Query: 482 RCSPGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSEC 598
RCSP R TP A SS + P SP P PS C
Sbjct: 379 RCSPDRDKQTPSPAPSSHII------PSSPLIPPTPSAC 411
>U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical
protein F52E1.5 protein.
Length = 248
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 352 SSSATRPSMMTTTNRSPAATLTRTPMTQTT 263
SSS T P +TTT + +T T T T TT
Sbjct: 75 SSSTTSPKPITTTETTTRSTTTTTTTTTTT 104
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +2
Query: 482 RCSPGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSEC 598
RCSP R TP A SS + P SP P PS C
Sbjct: 379 RCSPDRDKQTPSPAPSSHII------PSSPLIPPTPSAC 411
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 485 CSPG-RPGSTPGCASSSLSVSARLHHPPSP-CRSPNPSECLPGC 610
C+P +P P C S +L + PP+P C+ C P C
Sbjct: 650 CAPQCQPACDPQCISFTLKLPVMTTPPPTPSCQPQCQPACQPSC 693
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 451 KSLLRTRGATRERLS*RRSGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMT 272
K L++T TR+ S +S T+G G R A S SA+RP + PA L +
Sbjct: 1437 KELIQT---TRDVTSRPQSKATTSGDGTERPA-SRSASRPESRINQMKYPAPRLVERSSS 1492
Query: 271 QTTK-PKAA 248
Q + P+ A
Sbjct: 1493 QNVRSPRKA 1501
>Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical
protein F55H2.2 protein.
Length = 257
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 767 DTVEKLIPKTDEVMLRRFRNIRKMDNRKKRLKERNADQ 654
+T+ ++ + DE+ F ++K+ KK+LKE+ A Q
Sbjct: 184 NTLTYIVTELDEMEREEFFRMKKIQANKKKLKEQEAAQ 221
>U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical
protein T26A8.1 protein.
Length = 708
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 397 SGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKA 251
S V+T S T S+++T + TTT +T T + T++P+A
Sbjct: 325 STVETTPSTSTTTTSSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEA 373
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 476 DRRCSPGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSECLPG 607
D C P P P ++SS S H PP P + NP PG
Sbjct: 815 DEECDPPPPPK-PQVSTSSRMSSVPSHPPPPPQQLGNPMVGYPG 857
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 476 DRRCSPGRPGSTPGCASSSLSVSARLHHPPSPCRSPNPSECLPG 607
D C P P P ++SS S H PP P + NP PG
Sbjct: 815 DEECDPPPPPK-PQVSTSSRMSSVPSHPPPPPQQLGNPMVGYPG 857
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 361 TADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 257
T + + T+P+ TTT + T T T T TT P
Sbjct: 253 TTSTVTTTKPTTTTTTPTTTTTTPTTTTTTPTTTP 287
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 512 PGCASSSLSVSARLHHPPSPCRSPNPSECLPGCSTCP*SASLFQIR 649
P C S S +P + C + +EC CST P A + QI+
Sbjct: 213 PKCTQSCHSQCISQGNPAASCSNSCNTECSDKCSTRPVQAQVQQIQ 258
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 352 SSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 257
++ +T S TTT + T T P T TT+P
Sbjct: 406 ATKSTSSSTTTTTTTTTTTTTTEAPTTTTTEP 437
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 352 SSSATRPSMMTTTNRSPAATLTRTPMTQTTKP 257
++ +T S TTT + T T P T TT+P
Sbjct: 406 ATKSTSSSTTTTTTTTTTTTTTEAPTTTTTEP 437
>Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical
protein F11A10.3 protein.
Length = 522
Score = 27.9 bits (59), Expect = 10.0
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = -2
Query: 692 NRKKRLKERNADQDSESETETPIKGTSNTLEDILKXXXXXXXXXXXXVAPKPKAKKTRSQ 513
++KKR E +D DSE + + P TS T K A K K + +
Sbjct: 30 SKKKRSPEPESDADSEDDYDGP--STSQT----KKLKRGNSSTNRGKAANKTKRGSFQVK 83
Query: 512 AWIQDDPENIVDLADVSASRKIT----ATNPRSDQRTTELKTQRSK 387
I DD EN + D IT + +P + ++T +L+T++ K
Sbjct: 84 QEIMDDDEN-EEKIDGEVENGITSREHSPDPSTFKKTAKLQTKKKK 128
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 231 QKLRRLAALG-FVVCVIGVRVNVAAGLRFVVVIIEGLVADDESAV 362
++ RRL A+G FVV ++G N G+R + I+ +A ++ +
Sbjct: 414 ERFRRLGAVGGFVVPIVGRDANAPGGVRHLANEIDEFLAPNDQGL 458
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 725 LRRFRNIRKMDNRKKRLKERNADQDSESETETP 627
+RR R I++ KRL D+ SETETP
Sbjct: 1 MRRLRKIQEFWKFTKRLLTEKGKGDAGSETETP 33
>AL110484-21|CAB54413.1| 234|Caenorhabditis elegans Hypothetical
protein Y38E10A.21 protein.
Length = 234
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 467 RRPDRRCSPGRPGSTPGCASSSLSVSARLHHPPSPCRSPN 586
RR + S G GSTP +++++++ + PPSP SPN
Sbjct: 38 RRSNENQSNGN-GSTPPTSANNMNMISPNQVPPSPRLSPN 76
>AC024755-2|AAL65800.1| 498|Caenorhabditis elegans Hypothetical
protein Y34B4A.10 protein.
Length = 498
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 361 TADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAAS 245
T + T P+ + T + T++ TP+ TT P A S
Sbjct: 271 TVPTEIVTEPTTESATTPTTTTTISTTPLVTTTPPTAQS 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,833,333
Number of Sequences: 27780
Number of extensions: 299570
Number of successful extensions: 1883
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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