Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11f06
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 370 RPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTT 263
           RP    +SS + P+ +TTT  +   T      T TT
Sbjct: 92  RPLHPPASSTSLPATITTTTTTTTTTTATAAATATT 127



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 370  RPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF*RP 224
            RPR  D   +   +  T+T  + AA     P T   KP+    + F  P
Sbjct: 1087 RPRKRDQKQSDDKTKETSTVTAAAAATNIRPGTADNKPQLKPQKPFTSP 1135



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 497 RPGSTPGCASSS 532
           +P STPGC+S +
Sbjct: 888 KPASTPGCSSKN 899


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 251 GKPSKLLKAGTKRRYDDIL 195
           GKPS++ K G  RR+ ++L
Sbjct: 542 GKPSRISKQGLFRRFYNLL 560


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 352 SSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF*RPERN 215
           SS  +     +    +    L + P+TQ+ K  A +L +   P RN
Sbjct: 311 SSDLSESETSSDEEEADTRPLKKEPITQSNKRTAGNLATREHPSRN 356


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 512 AWIQDDPENIVDLADV 465
           +W+ D+   +VD +DV
Sbjct: 938 SWVSDNAHKVVDASDV 953


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,308
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)