Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e23
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    29   0.84 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    29   1.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   7.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   7.8  

>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 418 CDVIRGQ-NKKSSEHRLKSIILFGI*FRTLTF 510
           C VI G  N     H+LK++++FGI F+ L F
Sbjct: 185 CGVIAGAVNSTQPAHQLKNMVIFGILFQGLGF 216


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 391 NPALHNFTTCDVIRGQNKKSSEHRLK 468
           NP  H   +C+VI G+ KKS + R++
Sbjct: 242 NPLSHWIVSCNVIGGEKKKSEKARIR 267


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 213 TYLRIKKLKISYFTSKLLMSSKQSYHIFYLF 305
           T + I  L  S+ TSK  +SS + YH  YLF
Sbjct: 332 TIVDIILLHQSHSTSKEWLSSLEQYHCTYLF 362


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 228 KKLKISYFTSKLLMSSKQSYHIFYL-FTPLTMS 323
           + +K  Y +SKL+   ++SY  FY+   PL +S
Sbjct: 141 RTIKAEYESSKLVQPEQKSYEEFYMAVNPLDLS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,108
Number of Sequences: 5004
Number of extensions: 56615
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)