Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e21
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   2.0  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    27   4.5  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   7.9  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 352 IFLK*SPFYHNHILINYYHFE*TYSLRLELKNDDSGLLS 468
           +F+  +P+    +L N+  F  T +L  +L++DD GLLS
Sbjct: 829 LFISLTPYLSEDVL-NHSPFNDTNTLETKLQSDDRGLLS 866


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 483 VIGSVMEITFKTKLNSHTHSSEPMMKKFETNLNKILRK 596
           +I SV   T  TK +    S +PM+K++E  ++ +LRK
Sbjct: 373 IIQSVANGTSSTKTHLDV-SFQPMLKEYEEKVHNLLRK 409


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 292 LGRFLIVHVNQFIFSLITRCLLXSVIVSLFAICRIC 185
           L + L + + ++  +LI  CL  S +  LF  C++C
Sbjct: 223 LRKALTIRLGEYGNALIEHCLRRSKLDPLFPACQLC 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,302
Number of Sequences: 5004
Number of extensions: 53506
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)