Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e21
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    30   1.8  
AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    29   5.6  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    29   5.6  

>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
            protein C14B9.8 protein.
          Length = 1226

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 177  DIKHILHIANKLTMTDXNKHL 239
            D+ HILH+AN++   D NKHL
Sbjct: 1155 DVDHILHVANQI-FVDHNKHL 1174


>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 370 EIILKIFYSQKKAIVNIIVHKWCLKILGRFLIVHVN-QFIFSLITRCLLXSVIVSLFAIC 194
           EI+L +F+S     V  IV  W      +++ V+   +F+   IT   L  VI SLF IC
Sbjct: 73  EIVLVVFFS-----VEFIVRLWSAGCRSKYIGVYGRLKFVRKPITLIDLVVVICSLFVIC 127


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 370 EIILKIFYSQKKAIVNIIVHKWCLKILGRFLIVHVN-QFIFSLITRCLLXSVIVSLFAIC 194
           EI+L +F+S     V  IV  W      +++ V+   +F+   IT   L  VI SLF IC
Sbjct: 114 EIVLVVFFS-----VEFIVRLWSAGCRSKYIGVYGRLKFVRKPITLIDLVVVICSLFVIC 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,971
Number of Sequences: 27780
Number of extensions: 292957
Number of successful extensions: 449
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)