Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e19
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    29   0.97 
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    28   1.7  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    27   3.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.0  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.0  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    26   6.8  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 295 QKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNIS------LPATSE 456
           ++E K    I  + + L  G G PG  +    D E S  ++S   N+       LPA+ E
Sbjct: 598 ERETKEAEKIRELSVRLNGGNGFPGHVHNNREDDEVSIASTSSKSNVEMEDTRLLPASLE 657

Query: 457 LASTRSPS 480
           LA+T+  S
Sbjct: 658 LANTQGAS 665


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 787 PTV*LCCVGNVQYLYR*ILPTTARYCFRRFLYGLTQ*RNRAGVSNCAVWDSCAISILLTS 608
           PTV    + N  Y+    L     Y + +  Y + Q   + G+SN     SC  +   TS
Sbjct: 243 PTVPQAVIYNSPYIIT--LHNQYIYIWNKETYAMIQ---QIGISNIYSTFSCHKNTFFTS 297

Query: 607 NVYLWLVLAAD 575
           N Y+W++   D
Sbjct: 298 NSYVWILTPED 308


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 948 WAXRCFTSHFEVEVGTTVLYFPFFXVEVGHDSALLSRLFFEQYG 817
           +A    TS+F      ++++ PF  +++G   ALL  + F+ +G
Sbjct: 197 YAIAAATSYFFPNASVSIIFLPFIPIKIG--VALLGLMAFDAWG 238


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 2    ILQSNDQLYLCKYCKWRI----DKLLRFIRQCHLASEMVWRDLKKVRIHIGCSLLQHQLS 169
            +L S  +LY  K+    +     KL   +      +++  R L +V+I +  S +  QLS
Sbjct: 907  LLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQAKITQRKLSEVQIALADSKMNQQLS 966

Query: 170  SSDCTSLYLP 199
              D T ++LP
Sbjct: 967  GKDSTDVHLP 976


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +1

Query: 346 ALGRGLPGFGNTAVPDGEASSTASSLSRN--ISLPATSELASTR-SPSVT 486
           AL   LPG  NT +P+G +++T +S++ N   S  A+ ++ + + SPS++
Sbjct: 89  ALSHALPG--NTNLPNGTSTNTMASMAANGGASSVASKQMGANQISPSLS 136


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 437 DMFLLRDEAVEDASPSGTAVLPNPGNP 357
           D  ++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,115,566
Number of Sequences: 5004
Number of extensions: 88088
Number of successful extensions: 249
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)