Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e19
         (957 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         33   0.44 
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           29   4.1  
12_01_0926 + 9178804-9180324,9180612-9181157                           29   7.2  
10_01_0274 - 2901033-2901778,2902475-2902634                           29   7.2  
08_02_0988 + 23346696-23347523                                         28   9.6  
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242...    28   9.6  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 289 HAQKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 390
           H ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 129 HKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 358 PDREPALKL*KRSLAAPLPLFVRGVRVCGSC*NMFGSYDQRITNDLMALPV 206
           P R  +L+L   SL  P+P++V  +        ++ + D  I +D   LPV
Sbjct: 166 PQRFQSLQLSINSLTGPIPVYVANITTLKRFSCLYNNIDGNIPDDFAKLPV 216


>12_01_0926 + 9178804-9180324,9180612-9181157
          Length = 688

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 159 ISCQVQIALRY-TCPGETGNAIRSLVI 236
           ++C +Q+  R  T PGETG+ +RS V+
Sbjct: 326 VACSLQLMCRLVTAPGETGDKLRSQVL 352


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 864 PPQXQKMGSKAPSCPPQ-PQNGK*STEXPTST 956
           PP     G+ AP CPP  P+ G  +T  P  T
Sbjct: 237 PPSTPAYGTPAPECPPSTPEYGTPATACPPPT 268


>08_02_0988 + 23346696-23347523
          Length = 275

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 449 VAGRDMFLLR-DEAVEDASPSGTAVLPNPGNPRPRASA 339
           + G   +++R D  ++DASPS     P P  P PR  A
Sbjct: 1   MGGNQEYMIRFDGHIDDASPSSATAEPPPPLPPPRPFA 38


>06_01_0336 +
           2427017-2427121,2427585-2427662,2427889-2427960,
           2428105-2428671,2428822-2428935,2431308-2432246
          Length = 624

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 762 PTQHS*TVGTQNPAESA-SNHTAQKINGKVKHCRXPPQXQKMGSKAPSCPPQP 917
           P+  + T+   +PA +A S+H A  ++ +  H R P          PS  P P
Sbjct: 404 PSYPTITLDLTSPAAAATSSHAAFSLSNRFSHTRYPSTGFTFSGSGPSSAPWP 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,166,346
Number of Sequences: 37544
Number of extensions: 594052
Number of successful extensions: 1679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)