Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e19
         (957 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ356012-1|ABC86955.1|  818|Homo sapiens ZNF438 transcript varia...    33   2.0  
DQ356011-1|ABC86954.1|  818|Homo sapiens ZNF438 transcript varia...    33   2.0  
BC104757-1|AAI04758.1|  828|Homo sapiens zinc finger protein 438...    33   2.0  
BC101622-1|AAI01623.1|  828|Homo sapiens ZNF438 transcript varia...    33   2.0  
AL359532-3|CAM17193.1|  828|Homo sapiens zinc finger protein 438...    33   2.0  
AL359532-2|CAI13438.1|  818|Homo sapiens zinc finger protein 438...    33   2.0  
AL359532-1|CAI13437.1|  392|Homo sapiens zinc finger protein 438...    33   2.0  
AK131357-1|BAD18510.1|  779|Homo sapiens protein ( Homo sapiens ...    33   2.0  
AF440405-1|AAP97319.1|  392|Homo sapiens unknown protein.              33   2.0  
AF428258-1|AAP97298.1|  828|Homo sapiens hypothetical protein pr...    33   2.0  
U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar traffi...    31   6.2  
U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome...    31   6.2  
U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein.                  31   6.2  
U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein.                  31   6.2  
BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein.        31   6.2  

>DQ356012-1|ABC86955.1|  818|Homo sapiens ZNF438 transcript variant
           3 protein.
          Length = 818

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729


>DQ356011-1|ABC86954.1|  818|Homo sapiens ZNF438 transcript variant
           2 protein.
          Length = 818

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729


>BC104757-1|AAI04758.1|  828|Homo sapiens zinc finger protein 438
           protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>BC101622-1|AAI01623.1|  828|Homo sapiens ZNF438 transcript variant
           3 protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>AL359532-3|CAM17193.1|  828|Homo sapiens zinc finger protein 438
           protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>AL359532-2|CAI13438.1|  818|Homo sapiens zinc finger protein 438
           protein.
          Length = 818

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729


>AL359532-1|CAI13437.1|  392|Homo sapiens zinc finger protein 438
           protein.
          Length = 392

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303


>AK131357-1|BAD18510.1|  779|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16387 fis, clone TRACH2007483, weakly  similar
           to GASTRULA ZINC FINGER PROTEIN XLCGF7.1. ).
          Length = 779

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 655 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 690


>AF440405-1|AAP97319.1|  392|Homo sapiens unknown protein.
          Length = 392

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303


>AF428258-1|AAP97298.1|  828|Homo sapiens hypothetical protein
           protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 687
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar
           trafficking phosphoprotein protein.
          Length = 1411

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 301 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 417
           E KA   I+ +  A A  +G PG G T  P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251


>U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome
           protein.
          Length = 1411

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 301 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 417
           E KA   I+ +  A A  +G PG G T  P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251


>U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein.
          Length = 1411

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 301 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 417
           E KA   I+ +  A A  +G PG G T  P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251


>U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein.
          Length = 1411

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 301 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 417
           E KA   I+ +  A A  +G PG G T  P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251


>BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein.
          Length = 1126

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 301 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 417
           E KA   I+ +  A A  +G PG G T  P G+A + AS
Sbjct: 198 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 236


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,753,526
Number of Sequences: 237096
Number of extensions: 3222750
Number of successful extensions: 7779
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7775
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12658656216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)