Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e19
         (957 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    28   8.6  

>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 272 FLLKHVWFL*PKDYQ*PDGITSFTRASITKCNLNLTADAGEGSNRYVF-VPF 120
           FL+    FL   D + P G+ S T   +T C  N+   AG    RY+F +P+
Sbjct: 70  FLVFSFLFLQAMDTESPLGVFSATFGFLTVCITNVLLIAGVRLKRYIFLIPY 121


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = -2

Query: 506 GCIFFCYVTEGDLVDASSDVAGRDMFLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIK 327
           GC  + Y  +  ++     V G      R    E+    GTA  P+  NP P  + + I 
Sbjct: 12  GC--YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCIN 68

Query: 326 TIPRC--AFASFCAWRSCVR 273
            + +C   +      R CVR
Sbjct: 69  NVCQCRSGYVRNEITRQCVR 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,142,203
Number of Sequences: 27780
Number of extensions: 513751
Number of successful extensions: 1493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)