Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e19
         (957 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   5.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   5.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   5.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   9.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 259 CFNKNRTHERHAQKEAKAQRGIVFIVLALALGRGLP 366
           C+N++RT ERH  +        + ++ ++ +   LP
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMIASMKIKEALP 364


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 259 CFNKNRTHERHAQKEAKAQRGIVFIVLALALGRGLP 366
           C+N++RT ERH  +        + ++ ++ +   LP
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMIASMKIKEALP 364


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 259 CFNKNRTHERHAQKEAKAQRGIVFIVLALALGRGLP 366
           C+N++RT ERH  +        + ++ ++ +   LP
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMIASMKIKEALP 364


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 8  QSNDQLYLCKYCKWR 52
          + +D LY+C++C  R
Sbjct: 30 EQSDTLYVCEFCNRR 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,301
Number of Sequences: 438
Number of extensions: 6173
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)