Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11e18
(282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 0.89
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 1.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 1.2
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 1.6
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 1.6
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 1.6
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 2.7
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 2.7
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 24 3.6
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 24 4.7
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 23 6.3
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 23 6.3
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 23 6.3
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 23 6.3
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 23 8.3
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 23 8.3
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 23 8.3
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 0.89
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 160 LQHIAPSITL*FFKYVL*MYFTSRFLSA 243
L H++P I+ +KY L F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 1.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -2
Query: 176 GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 36
G CC NG L L R +N+D +L S YT N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 25 LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 117
L T+THT HN L S L T ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 134 LDRNQLQNTDMEVLESLEYTSDNVE 60
+D N +++D++ LEYT+DN E
Sbjct: 8 IDPNSSEDSDIQEDAELEYTADNPE 32
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 220 FTSRFLSALGTSNTLAVR 273
FT FLS +G SNT+ V+
Sbjct: 151 FTKSFLSKIGESNTITVK 168
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 97 CWKV*NTLVTTLNCYAKKY 41
CWK T+V L Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 24.6 bits (51), Expect = 2.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 20 CNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 124
CN++ H + H +N TL C C++ D
Sbjct: 110 CNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 2.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 76 VYSKLSNTSMSVFCS 120
VYS L+NT++ FCS
Sbjct: 133 VYSSLANTTLEEFCS 147
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 3.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 173 AMCCNGDCLAVVVLDRNQLQNTDMEVLESL--EYTSDNVELLCKKVCVI 33
A C D L L Q NTD +V ++L ++D+ +L+ K C++
Sbjct: 204 ASCARWDSLFTFSLSLFQTGNTDWKVCKALLDSASNDDSKLVPLKDCIL 252
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 23.8 bits (49), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 58 NSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQS 156
NST S+ +SN++ S+ + TTTAK S
Sbjct: 84 NSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKAS 116
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 23.4 bits (48), Expect = 6.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 228 PLFERVRNKQYISR 269
P+F R RN+ Y+SR
Sbjct: 325 PIFWRTRNESYVSR 338
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.4 bits (48), Expect = 6.3
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 130 SNTTTAKQSPLQHIAPSI 183
SN + K SP++H++P++
Sbjct: 198 SNLPSNKSSPVKHVSPNV 215
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 171 RTFNYTVIFQICIINVFHVPL 233
R ++ V+FQIC I +F + L
Sbjct: 197 RFSSFNVVFQICTILIFIISL 217
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 129 PKSAAKHGHGSV 94
PKS A +GHGSV
Sbjct: 393 PKSQAAYGHGSV 404
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/37 (21%), Positives = 23/37 (62%)
Frame = -2
Query: 140 VVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIV 30
+VLD +L D++++ S+E ++ ++ +C+++
Sbjct: 928 MVLDGIELVEGDLQIIRSVEVKNEFLKSNTDGICIVL 964
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 144 RCGVGPKSAAKHGHGSVGKF 85
+CG+ P + AK +GSV +F
Sbjct: 93 KCGIRPVNRAKLTNGSVTEF 112
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.0 bits (47), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 83 LNFPTLPCPCFAADFGPTPQRPNNRHCN 166
++FP+L DF + PNNR CN
Sbjct: 247 VHFPSLTT-AETLDFAAKCRTPNNRPCN 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,512
Number of Sequences: 5004
Number of extensions: 25447
Number of successful extensions: 79
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -