Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11e18
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 33 0.045
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192... 29 0.73
05_01_0520 - 4492182-4492780,4496886-4497951 28 0.97
12_02_0586 + 20831933-20832378,20832434-20833031,20833813-208339... 27 3.0
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 3.0
07_01_0117 + 894314-896677 26 5.2
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474... 26 5.2
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973... 25 6.8
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 25 6.8
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 25 9.0
10_08_0419 - 17783202-17784938 25 9.0
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119... 25 9.0
03_05_0464 - 24585422-24585441,24585585-24585690,24585779-245859... 25 9.0
02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353 25 9.0
01_06_0702 + 31324790-31325030,31325130-31325254,31325395-313256... 25 9.0
01_01_0418 - 3142659-3145622 25 9.0
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 32.7 bits (71), Expect = 0.045
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 77 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 208
C+++ T PCP + P+R N CNTS L +C ++
Sbjct: 23 CLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66
>01_07_0061 +
40818077-40818241,40818494-40818716,40819015-40819263,
40819455-40819505,40819611-40819871,40819994-40820046,
40820234-40820348,40820475-40820696,40821280-40822253
Length = 770
Score = 28.7 bits (61), Expect = 0.73
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -2
Query: 281 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 165
++HL NV+ PNA LKK V Y+YN KN+ E C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755
>05_01_0520 - 4492182-4492780,4496886-4497951
Length = 554
Score = 28.3 bits (60), Expect = 0.97
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 191 YSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSD 69
Y V +G + + DCL V DR+ L + VLE +Y+SD
Sbjct: 257 YGVDDGFIDVSQDCLCFVNTDRDDLYKLSVWVLE--DYSSD 295
>12_02_0586 +
20831933-20832378,20832434-20833031,20833813-20833986,
20834208-20834570
Length = 526
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -2
Query: 173 AMCCNGDCLAVVVLD--RNQLQNTDMEVLESLE-YTSDNVELLCKKVCVI 33
A CC +CL++ + D RNQ N+ M + + E + + + L C ++ I
Sbjct: 391 AKCCKAECLSINISDQGRNQCVNS-MCICDQPEGWEKETISLECLRIVEI 439
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 172 APSITL*FFKYVL*MYFTSRFLSA 243
AP+IT YVL M+FT+ F+SA
Sbjct: 9 APAITKFLKPYVLKMHFTNNFVSA 32
>07_01_0117 + 894314-896677
Length = 787
Score = 25.8 bits (54), Expect = 5.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 68 CH*CILNFPTLPCPCF 115
C C++ +PT+ CPC+
Sbjct: 481 CVRCMMRWPTICCPCY 496
>04_04_1563 -
34445832-34445891,34445981-34446097,34447363-34447450,
34447626-34447675,34447848-34448285
Length = 250
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -1
Query: 177 RCDVLQWRLFGRCGVGPKSAAKHGHGSVGKF 85
R DV GRCG GP A G F
Sbjct: 61 RVDVASCGCLGRCGAGPNFGASVSGGGAAVF 91
>03_05_0787 +
27696347-27696708,27696851-27696857,27697066-27697371,
27697454-27697873
Length = 364
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 101 EVLESLEYTSDNVELLCKKVCVIVDNYN 18
+V + +T++N +L C+ C +DN N
Sbjct: 124 DVNDMANWTNENTKLFCELYCKQIDNGN 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 239 LKKRDVKYIYNTYLKNYSVIEGAMCCNGDCLAVVVLDRNQL 117
+K V Y Y NY I +C +GD + V+VL + Q+
Sbjct: 74 IKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEQV 114
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 194 NYSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSD 69
+YSV+EG + CL + R+ + TD E + +E SD
Sbjct: 15 DYSVVEGRAWTHCGCLGCLFFLRD--EETDTERMARIEAASD 54
>10_08_0419 - 17783202-17784938
Length = 578
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 191 YSVIEGAMCCNGDC-LAVVVLD 129
Y+V+ GA+CC G+ AV +LD
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLD 463
>04_03_0331 +
14510848-14511124,14511139-14511528,14511708-14511997,
14512080-14512154,14512194-14512409,14512727-14512795,
14512941-14513891
Length = 755
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 80 YTSDNVELLCKKVCVIVDNYNQV 12
+T++N +L C+ C +DN N +
Sbjct: 225 WTNENTKLFCELYCKQIDNGNYI 247
>03_05_0464 -
24585422-24585441,24585585-24585690,24585779-24585926,
24586017-24586144,24586804-24586939,24587711-24587895
Length = 240
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 77 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHLQLHC 190
C+L PC + P++ N CNTS L +C
Sbjct: 35 CLLRPSAPPCAVCSLGVSLPPEQNPNYRCNTSLLIDYC 72
>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
Length = 135
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 140 QRPNNRHCNTSHLQLH 187
+R N HC +SH Q+H
Sbjct: 31 KRLQNLHCESSHFQMH 46
>01_06_0702 +
31324790-31325030,31325130-31325254,31325395-31325640,
31325745-31326000,31326102-31326325
Length = 363
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -2
Query: 125 NQLQNTDMEVLESLEYTSDNVELLCKKVCVIVDNYNQVLP 6
N+L + +E + V + ++V V+V+ +N++LP
Sbjct: 227 NELAQNSRNGVTCIERINSAVRMFNRRVVVLVNQFNRLLP 266
>01_01_0418 - 3142659-3145622
Length = 987
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 49 LHNNSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQ 153
LHN L + LS+ SM +CS F ++TT Q
Sbjct: 173 LHNLKELYMGTIDLSSNSMVQWCSAFSNSTTPQLQ 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,711,104
Number of Sequences: 37544
Number of extensions: 151935
Number of successful extensions: 416
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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