Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e18
         (282 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ860102-1|ABI64147.1| 1159|Homo sapiens RAD51-associated protei...    27   8.4  
AL590103-11|CAI12135.1|  239|Homo sapiens heparan sulfate proteo...    27   8.4  
AL137533-1|CAB70796.1|  198|Homo sapiens hypothetical protein pr...    27   8.4  
AF479675-1|AAL79552.1|  240|Homo sapiens perlecan variant minipe...    27   8.4  
AF263918-1|AAF73293.1|  910|Homo sapiens inner nuclear membrane ...    27   8.4  
AF112299-1|AAD31593.2|  911|Homo sapiens integral inner nuclear ...    27   8.4  

>DQ860102-1|ABI64147.1| 1159|Homo sapiens RAD51-associated protein 2
           protein.
          Length = 1159

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 197 KNYSVIEGAMCCNGDCLAVVVLDR-NQLQNTDMEVLESLEYTSDNVELL--CKKVC 39
           KN++++E A     +CL   VL R  + QN D  V   L     N  ++  CK  C
Sbjct: 365 KNFAILENANWEEAECLDSYVLTRLEKSQNWDCNVRHILRRNRGNCWIINNCKTKC 420


>AL590103-11|CAI12135.1|  239|Homo sapiens heparan sulfate
           proteoglycan 2 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PTLPCPCFAADFGPTPQRPNNRH 160
           PTL  PCF    GP P  P   H
Sbjct: 192 PTLLSPCFPVPSGPCPVGPRRPH 214


>AL137533-1|CAB70796.1|  198|Homo sapiens hypothetical protein
           protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 134 TPQRPNNRHCNT-SHLQLHCNFSN 202
           TP +P+N+H N+ SHL+L    +N
Sbjct: 170 TPLKPSNKHMNSMSHLRLRTGLTN 193


>AF479675-1|AAL79552.1|  240|Homo sapiens perlecan variant miniperl
           protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PTLPCPCFAADFGPTPQRPNNRH 160
           PTL  PCF    GP P  P   H
Sbjct: 193 PTLLSPCFPVPSGPCPVGPRRPH 215


>AF263918-1|AAF73293.1|  910|Homo sapiens inner nuclear membrane
           protein protein.
          Length = 910

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 134 TPQRPNNRHCNT-SHLQLHCNFSN 202
           TP +P+N+H N+ SHL+L    +N
Sbjct: 882 TPLKPSNKHMNSMSHLRLRTGLTN 905


>AF112299-1|AAD31593.2|  911|Homo sapiens integral inner nuclear
           membrane protein MAN1 protein.
          Length = 911

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 134 TPQRPNNRHCNT-SHLQLHCNFSN 202
           TP +P+N+H N+ SHL+L    +N
Sbjct: 883 TPLKPSNKHMNSMSHLRLRTGLTN 906


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,675,852
Number of Sequences: 237096
Number of extensions: 861316
Number of successful extensions: 1665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)