Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11e18
(282 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical pr... 29 0.51
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 28 0.90
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 28 0.90
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 27 2.1
U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr... 27 2.7
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 2.7
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 2.7
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 2.7
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 26 3.6
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 26 3.6
AF016418-8|AAK18897.1| 330|Caenorhabditis elegans Serpentine re... 26 3.6
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 26 4.8
AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm rec... 26 4.8
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr... 25 6.3
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 25 6.3
Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical pr... 25 6.3
AF036703-4|AAB88555.1| 261|Caenorhabditis elegans Hypothetical ... 25 6.3
Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical pr... 25 8.4
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 25 8.4
AF067216-6|AAC17522.1| 400|Caenorhabditis elegans Hypothetical ... 25 8.4
AF016451-11|AAB65999.1| 327|Caenorhabditis elegans Hypothetical... 25 8.4
AC024746-2|AAO38587.1| 163|Caenorhabditis elegans Hypothetical ... 25 8.4
AC024746-1|AAO38586.1| 181|Caenorhabditis elegans Hypothetical ... 25 8.4
>Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical
protein Y57G11B.7 protein.
Length = 215
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 77 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 178
CILNF LP A T PN+ HC+ +L
Sbjct: 3 CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 0.90
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -2
Query: 260 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 93
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 92 -ESLEYTSDNVELLCKKVCVIV 30
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 0.90
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -2
Query: 260 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 93
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 92 -ESLEYTSDNVELLCKKVCVIV 30
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 174 TFNYTVIFQICIINVFHVPLF 236
TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196
>U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical
protein D1009.1a protein.
Length = 655
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 204 CIINVFHVPLFERVRNKQYISRQMH 278
CI N+ +P+F+ R K IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207
>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
R09A8.1 protein.
Length = 1095
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 116 QNTDMEVLESLEYTSDNVELLCKKVCVIVD 27
+N M + L+ + ++ L C KVCVI D
Sbjct: 1003 ENASMSGRQPLDTSRKHMFLFCNKVCVITD 1032
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 80 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 178
+ + TLP P A + TPQ+P H + +HL
Sbjct: 66 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 80 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 178
+ + TLP P A + TPQ+P H + +HL
Sbjct: 83 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 80 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 178
+ + TLP P A + TPQ+P H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = -2
Query: 149 LAVVVLDRNQL---QNTDMEVLESLEYTSD 69
LAV +LDRN++ +N + E+LE L+ S+
Sbjct: 216 LAVAILDRNKMAENENLENEILEILDNDSE 245
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical protein
K02C4.3 protein.
Length = 1307
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 60 FNVVTSVF*TFQHFHVRVLQLISVQHHNGQTIAIATHRTFNYTVIFQICIIN 215
F+ +T + QH + LQLI ++ H + V+ +CII+
Sbjct: 1144 FSTITMIKLIMQHMASKTLQLIDMEFHLSKNERRVRFEDIIREVVSSVCIIH 1195
>AF016418-8|AAK18897.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein169 protein.
Length = 330
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 134 TPQRPNNRHCNTSHLQLHCNFSNMYYKCISRP 229
TP + N L L C FS+ Y+ C++ P
Sbjct: 41 TPSKMQNVRNTMFLLHLVCAFSDFYFSCLAIP 72
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -2
Query: 275 HLTANVLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCLAVVV 135
+L + + VPN K+ + Y+ N + N +++ A C +AV++
Sbjct: 257 NLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVML 303
>AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm
receptor protein 206 protein.
Length = 364
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 4 FGNTWL*LSTITHTFLHNNSTLSL--VYSKLSNTSMSVF 114
+G+++ ++ +THTFL+ + L + V+ +SM++F
Sbjct: 71 YGSSFFIMTPLTHTFLNKQNALIMQAVWCGFFGSSMAIF 109
>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
protein F14B4.3 protein.
Length = 1127
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 168 VLQWRLFGRCGVGPKSAAKHGHGSVGKF 85
++QWR+ +G K A++HG + F
Sbjct: 842 LIQWRIERNPIIGDKFASRHGQKGINSF 869
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical protein
T21C9.2 protein.
Length = 1058
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 194 NYSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLE--SLEYTSDNVELLCKKVCVIVDNY 21
N V+E N C ++ L LQ ++ + +L ++EL+C+ + ++ D
Sbjct: 852 NSRVVELLKTFNSRCCQLI-LGAGALQLVGLKTISVRNLALAGRSLELVCRFIPMVHDEM 910
Query: 20 NQVLPK 3
++VLP+
Sbjct: 911 DRVLPE 916
>Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical
protein F53B7.2 protein.
Length = 572
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 135 HHNGQTIAIATHRTFNYTVIFQICIINVFHV 227
H + T + +R ++ V F +CI NVF++
Sbjct: 2 HRSLSTFSFLINRFDSFFVSFSVCISNVFYL 32
>AF036703-4|AAB88555.1| 261|Caenorhabditis elegans Hypothetical
protein T11F8.1 protein.
Length = 261
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 37 THTFLHNNSTLSLVYSKLSNTSMSVFCS*FRSNTTTA 147
T+ NN L++ N+ ++ + + F SN TTA
Sbjct: 86 TYGIFQNNLLALLIFYNFQNSPLTTYFAFFVSNVTTA 122
>Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical
protein T23G11.5 protein.
Length = 512
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 111 VLQLISVQHHNGQTIAIATHRTFNYTVIFQICIINVFHVPLFERV 245
V + QH GQ I I ++ NY + I+N+ LFE +
Sbjct: 191 VFVFLHAQHVMGQNIFIFKNKILNYLI---YSILNLHKFKLFEEI 232
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 125 FGPTPQRPNNRHCNTSH 175
F P PQ P N H ++SH
Sbjct: 48 FVPAPQGPQNGHTSSSH 64
>AF067216-6|AAC17522.1| 400|Caenorhabditis elegans Hypothetical
protein C35E7.6 protein.
Length = 400
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -2
Query: 134 LDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIVDNYNQVLP 6
++ + +D E+ +E +++CKK+ I+ Y+ V P
Sbjct: 283 MEEKAIVESDEEIQSFIEEIEKTQDIVCKKIKAILWFYHNVKP 325
>AF016451-11|AAB65999.1| 327|Caenorhabditis elegans Hypothetical
protein C03A7.2 protein.
Length = 327
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +2
Query: 98 LPCPCFAADFGPTPQRPNNRHCNTSHLQLHCNFSNM 205
L C C ++ P+ N+ C T + C S M
Sbjct: 275 LGCACVSSRTPPSAHHDNSEPCETRRMAQLCTISTM 310
>AC024746-2|AAO38587.1| 163|Caenorhabditis elegans Hypothetical
protein Y110A2AL.4b protein.
Length = 163
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 139 TTAKQSPLQHIAPSITL*FFKYVL*MYFTSRFLSALGTSNT 261
T +K PL HI+ F K M T++ + +GT NT
Sbjct: 45 TMSKMIPLNHISDETLDKFIKAHKSMKMTAKSATFIGTGNT 85
>AC024746-1|AAO38586.1| 181|Caenorhabditis elegans Hypothetical
protein Y110A2AL.4a protein.
Length = 181
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 139 TTAKQSPLQHIAPSITL*FFKYVL*MYFTSRFLSALGTSNT 261
T +K PL HI+ F K M T++ + +GT NT
Sbjct: 45 TMSKMIPLNHISDETLDKFIKAHKSMKMTAKSATFIGTGNT 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,115,439
Number of Sequences: 27780
Number of extensions: 149932
Number of successful extensions: 462
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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