Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e16
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    30   0.49 
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.6  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    27   3.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   4.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   4.5  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   4.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   7.9  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   7.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   7.9  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 260 DFHIIKWYIACIVKYMNFSNK*KILNHSSTY 352
           DFHI    I C ++ M+F N  + LN S  Y
Sbjct: 129 DFHIYSQLIMCFIREMSFENAEETLNASLPY 159


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 468 YFLYAVCPQGTNILFVVLRYFPGVRELKCIALAIYKGSFSYPPTIASIGNELLF 629
           YF+   C  G  +L V +  FP  R L  ++ +I  G+ ++  ++ +  N LLF
Sbjct: 162 YFIADFCYWGNILLLVYIWIFPESRRLFILSYSISYGTLAW--SVVAWRNSLLF 213


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
 Frame = -3

Query: 481 AYRKYDFEILCGFNYEWVKTSDNYIPENAVV-------------GGYSEVRYEPLYIGRA 341
           A+    F    G ++EW K+ D  +P   +V             G Y E RYE + +   
Sbjct: 100 AFSGIAFSAAKGLDWEWCKSPDRGLPRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEK 159

Query: 340 MVKNFLLIGK 311
           ++KNF  + K
Sbjct: 160 VLKNFQRLQK 169


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 131 KL*QVASSQTFNLLLFTYYNVVFVMEETTPYIFLN 235
           KL    SSQ  +  L T Y + F +E++ P  FLN
Sbjct: 238 KLLMKLSSQNDDKSLLTAYQLAFDLEDSAPQEFLN 272


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 583 NEPLYIARAIHFNSLTPGKY---LRTTNKMFVPWGHTAYRKYDFEILCGFNYEWVKTSDN 413
           +E L I+    + ++ PG        TN+ FV W  T Y++         + + VKT   
Sbjct: 350 SEKLTISNVNRYLNIVPGSLDLQFSLTNENFVHWNSTVYQELLNLKSNNSSVDGVKTRRQ 409

Query: 412 YIPENAVV 389
            + ENA++
Sbjct: 410 LLEENALL 417


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 257 FDFHIIKWYIACIVKYMNFSNK*KILNHSSTYVKW 361
           FD   + WY     KY+ F+   ++ + S T +KW
Sbjct: 215 FDTGDVLWYDPINFKYLRFNKNGQLNSSSVTAIKW 249


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 622 CYLSFLPNVVHHPQFPYHFCNVSYLGILG 708
           CY++  P+ +      Y F N S + ILG
Sbjct: 749 CYVNAFPSYIRLEDIAYPFANNSMIAILG 777


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 56  ATAIMNFINNKSSSSHRQLSYGSRH 130
           A+ I  FIN+++S++HR+  YG ++
Sbjct: 428 ASRIETFINDEASNNHREDFYGVKN 452


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 778 SIISRTTYNLLFKISTPSGTISGP--PIFLNSLHCK 677
           +I  RTT+  +F I+ PSG I+     +FL+ L C+
Sbjct: 242 AICQRTTWRWIFFINLPSGGIATALIVVFLHLLPCE 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,655,101
Number of Sequences: 5004
Number of extensions: 79306
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)