Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11e16
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1028 - 23752118-23752274,23753918-23754053,23754236-237551... 30 2.1
04_04_0244 - 23869222-23870322,23871456-23871521 30 2.1
02_04_0456 - 23089507-23090607,23091561-23091635 30 2.1
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 29 6.3
06_03_0242 - 18610770-18611201 29 6.3
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 6.3
12_02_0042 + 12738990-12739421 28 8.3
09_02_0137 - 4759112-4759735 28 8.3
07_03_0720 - 20926363-20926794 28 8.3
07_01_1059 + 9314521-9315144 28 8.3
06_02_0310 + 14158693-14159316 28 8.3
05_01_0408 - 3223472-3223903 28 8.3
04_01_0517 + 6784158-6784589 28 8.3
01_01_0798 + 6208138-6208140,6208798-6208897,6209228-6209688 28 8.3
>08_02_1028 -
23752118-23752274,23753918-23754053,23754236-23755195,
23755770-23756373
Length = 618
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 464 IIFSICSMSPRHKHFVCCSKVFSRCQRIKMYCS 562
++FS ++SPR +H+ C + SR +++ CS
Sbjct: 354 LMFSKYAISPRAEHYACIVDILSRAGQLEKACS 386
>04_04_0244 - 23869222-23870322,23871456-23871521
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 193 CFRHGRDHALHFSQLISHMNRLRFPYY---QMVHSMYCKVHELF 315
CFR+ D A Q SH++R+RF Y+ + + + C+ +LF
Sbjct: 294 CFRYISDFAFKM-QAYSHVDRIRFKYFLNPERIQDVICRGADLF 336
>02_04_0456 - 23089507-23090607,23091561-23091635
Length = 391
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 193 CFRHGRDHALHFSQLISHMNRLRFPYY---QMVHSMYCKVHELF 315
CFRH D Q SH++R+RF Y+ + + + C+ +LF
Sbjct: 297 CFRHINDFVFKM-QAYSHVDRIRFKYFLNPKRIQHVICQGADLF 339
>11_04_0364 -
16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 670 KEIEGGELRWVKMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKYLRTTNKMFVPW 491
K++ EL ++ N LP ++ Y+N P+Y+ R SL P Y+ N++ W
Sbjct: 361 KDVIESELWDLEQPRNEVLP--SLELSYKNMPIYLKRCFVAISLYPKDYIFDRNQVLQLW 418
>06_03_0242 - 18610770-18611201
Length = 143
Score = 28.7 bits (61), Expect = 6.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPEMVLMHGIGLVLTG 60
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 28.7 bits (61), Expect = 6.3
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = -3
Query: 589 YENEPLYIARAIHFNSLTPGKYLRTTNKMFVPWGHTAYRKYDFEILCGF------NYEWV 428
Y P+ A N +P Y + + FVP G K D+EI+ F W
Sbjct: 102 YCGSPVGTIAACDPNDASPLNYDQVFIRDFVPSGIAFLLKGDYEIVRNFILHTLQLQSWE 161
Query: 427 KTSDNYIPENAVVGGYSEVRYEPL 356
KT D + P ++ +VR PL
Sbjct: 162 KTMDCHSPGQGLMPASFKVRVVPL 185
>12_02_0042 + 12738990-12739421
Length = 143
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPEMLLMHGIGLVLTG 60
>09_02_0137 - 4759112-4759735
Length = 207
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPGMLLMHGIGLVLTG 60
>07_03_0720 - 20926363-20926794
Length = 143
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPGMLLMHGIGLVLTG 60
>07_01_1059 + 9314521-9315144
Length = 207
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPGMLLMHGIGLVLTG 60
>06_02_0310 + 14158693-14159316
Length = 207
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPGMLLMHGIGLVLTG 60
>05_01_0408 - 3223472-3223903
Length = 143
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPEMLLMHGIGLVLTG 60
>04_01_0517 + 6784158-6784589
Length = 143
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 32 QELSCMCVHEVREAPEMLLMHGIGLVLTG 60
>01_01_0798 + 6208138-6208140,6208798-6208897,6209228-6209688
Length = 187
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 516 QQTKCLCLGDILHIENMILRYYVGLIMSG 430
Q+ C+C+ ++ M+L + +GL+++G
Sbjct: 76 QELSCMCVHEVREAPEMLLMHGIGLVLTG 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,219,867
Number of Sequences: 37544
Number of extensions: 450850
Number of successful extensions: 956
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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