Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e16
         (861 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         73   9e-15
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            29   0.14 
EF588455-1|ABQ96691.1|  177|Anopheles gambiae transposase protein.     25   3.9  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    25   3.9  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   5.2  
AY341224-1|AAR13788.1|  287|Anopheles gambiae TOLL9 protein.           23   9.0  
AY341223-1|AAR13787.1|  287|Anopheles gambiae TOLL9 protein.           23   9.0  
AY341222-1|AAR13786.1|  287|Anopheles gambiae TOLL9 protein.           23   9.0  
AY341221-1|AAR13785.1|  287|Anopheles gambiae TOLL9 protein.           23   9.0  
AY341220-1|AAR13784.1|  287|Anopheles gambiae TOLL9 protein.           23   9.0  
AF444782-1|AAL37903.1|  576|Anopheles gambiae Toll9 protein.           23   9.0  

>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 73.3 bits (172), Expect = 9e-15
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
 Frame = -3

Query: 643 WVKMTNNSSLPMDAIVGGYENE--PLYIARAIHFNSLTPGKYLRTTNKMFVPWGHTAYRK 470
           W+  + +   P   + GG +++   +++ RA H   L P K +      +V +G      
Sbjct: 5   WIPTSVHGPYPPHMVPGGVDSDGAQIFVGRAHHAGDLLPAKVIPDKTAAYVAYGGQETLV 64

Query: 469 YDFEILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGRAMVKNFLLIGKVHVLYNT 290
              E+L      W   S   +P  AVVGG++    E LY+GRA  +    IGKV   +N 
Sbjct: 65  EHVEVLVHKQLIWDTASAGQVPLGAVVGGHTSDG-EILYVGRAYHEGSQTIGKVQCSHNC 123

Query: 289 CYVPFDNMEIEVGSYEILVEK 227
            Y+P+   E+ V +YE+L E+
Sbjct: 124 IYIPYGGAEVSVPTYEVLCER 144



 Score = 28.7 bits (61), Expect = 0.24
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 433 WVKTS-DNYIPENAVVGGYSEVRYEPLYIGRAMVKNFLLIGKVHVLYNTCYVPFDNMEIE 257
           W+ TS     P + V GG      + +++GRA     LL  KV       YV +   E  
Sbjct: 5   WIPTSVHGPYPPHMVPGGVDSDGAQ-IFVGRAHHAGDLLPAKVIPDKTAAYVAYGGQETL 63

Query: 256 VGSYEILVEKNV 221
           V   E+LV K +
Sbjct: 64  VEHVEVLVHKQL 75


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 29.5 bits (63), Expect = 0.14
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 107 QLSYGSRHKL*QVASSQTFNLLLFTYYNVVFVMEETTPYI 226
           ++ YG      ++A S  FN+LLFT  N+V V  +T PYI
Sbjct: 336 EMRYGIPKLTTKLADSDGFNVLLFTGANLVSV--QTKPYI 373


>EF588455-1|ABQ96691.1|  177|Anopheles gambiae transposase protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 399 MQSSVVTQKSVTNHFT*VELWLRIFYLLEKFMY 301
           M  +  T   V +HF+ VE   + FY L+ F Y
Sbjct: 2   MAPTNATTSPVWDHFSPVETGAKCFYCLKVFKY 34


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 81  FIKFIMAVASXNKLYIKPGCA 19
           F K+IM  A  ++ ++KPGCA
Sbjct: 577 FFKWIMYSAVTDEDHLKPGCA 597


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 676 SDKEIEGGELRWVKMTNNSSLPMDAIVGGYEN 581
           SD  +E  + +W ++ +      D ++GGY N
Sbjct: 95  SDLTVEEYKRKWTEIVSMLPRNRDTVIGGYVN 126


>AY341224-1|AAR13788.1|  287|Anopheles gambiae TOLL9 protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 457 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGR 344
           I C  NY  VK   N +     V G   +  EPL +GR
Sbjct: 37  IQCSCNY--VKFLRNILHNRTDVAGAYTISAEPLIVGR 72


>AY341223-1|AAR13787.1|  287|Anopheles gambiae TOLL9 protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 457 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGR 344
           I C  NY  VK   N +     V G   +  EPL +GR
Sbjct: 37  IQCSCNY--VKFLRNILHNRTDVAGAYTISAEPLIVGR 72


>AY341222-1|AAR13786.1|  287|Anopheles gambiae TOLL9 protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 457 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGR 344
           I C  NY  VK   N +     V G   +  EPL +GR
Sbjct: 37  IQCSCNY--VKFLRNILHNRTDVAGAYTISAEPLIVGR 72


>AY341221-1|AAR13785.1|  287|Anopheles gambiae TOLL9 protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 457 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGR 344
           I C  NY  VK   N +     V G   +  EPL +GR
Sbjct: 37  IQCSCNY--VKFLRNILHNRTDVAGAYTISAEPLIVGR 72


>AY341220-1|AAR13784.1|  287|Anopheles gambiae TOLL9 protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 457 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGR 344
           I C  NY  VK   N +     V G   +  EPL +GR
Sbjct: 37  IQCSCNY--VKFLRNILHNRTDVAGAYTISAEPLIVGR 72


>AF444782-1|AAL37903.1|  576|Anopheles gambiae Toll9 protein.
          Length = 576

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 457 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGR 344
           I C  NY  VK   N +     V G   +  EPL +GR
Sbjct: 264 IQCSCNY--VKFLRNILHNRTDVAGAYTISAEPLIVGR 299


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,119
Number of Sequences: 2352
Number of extensions: 19249
Number of successful extensions: 304
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)