Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e16
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical p...    33   0.26 
Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical p...    33   0.26 
Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical ...    28   9.8  

>Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = -1

Query: 438 MSGLKRVIIT---YQKMQSSVV--TQKSVTNHFT*VELWLRIFYLLEKFMYFTIHAMYHL 274
           +S LK +++T   +Q +QSS+V  TQ  + NH   +ELW   +     F  F  ++M+H+
Sbjct: 36  LSTLKAILLTNCCFQLLQSSMVFFTQIQLVNHLVPIELW--SYGPCRHFEAFMCYSMFHI 93

Query: 273 I 271
           +
Sbjct: 94  L 94


>Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = -1

Query: 438 MSGLKRVIIT---YQKMQSSVV--TQKSVTNHFT*VELWLRIFYLLEKFMYFTIHAMYHL 274
           +S LK +++T   +Q +QSS+V  TQ  + NH   +ELW   +     F  F  ++M+H+
Sbjct: 36  LSTLKAILLTNCCFQLLQSSMVFFTQIQLVNHLVPIELW--SYGPCRHFEAFMCYSMFHI 93

Query: 273 I 271
           +
Sbjct: 94  L 94


>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
           protein K10D11.5 protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = -3

Query: 709 PPIFLNSLHCKSDKEIEGGELRWVKMTNNSSLPMDAIVG--GYEN----EPLYIARAIHF 548
           PP+F N+ +C  +  +  G    V++T N ++P D  V   G++N    + +Y A   HF
Sbjct: 49  PPLFPNNFNCLFNIMVPVGWSAVVRLTMNMTIPSDFAVSVRGFDNYGNSDAVYTATNEHF 108

Query: 547 NSLTPG 530
             ++ G
Sbjct: 109 YFISNG 114


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 478 YRKYDFEILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGRAMVKNFLLIGKVHVL 299
           Y+  D E L  FN    +  D   PE          +Y+P++  R  ++NF  +   HV 
Sbjct: 8   YKAPDMEYLA-FNMAVQRLVDTGYPEEI-----KSFKYDPIFPVRGKLRNFRFVSVAHVF 61

Query: 298 YNT 290
           Y+T
Sbjct: 62  YST 64


>Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical
           protein F42E11.3 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
 Frame = +2

Query: 152 SQTFNLLLFTYYNVVFVMEETTPYIFLN*YLI*TDFDFHIIKWYIACIVKYMNFS-NK*K 328
           SQ F  L +T+Y ++F++   T   F++ +     F   +I +  A +++  +F  N  +
Sbjct: 30  SQMFGFLFYTFYLIIFLVHGKT--FFISEHTFKAIFIIQMITFGAALVIQKFSFMVNSVE 87

Query: 329 ILNHSS-TYVKWFV---TDF*VTTDDCIFWYVI 415
            + +S+  ++  FV    D  VT    ++W+V+
Sbjct: 88  YVTYSTFPFIPKFVISICDRLVTAQMPLYWFVV 120


>U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical
           protein F43C9.1 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 691 SLHCKSDKEIEGGELRWVKMTNNSSLPMDAIVGGYENE 578
           S H  S K  +    RW+  T + +LP D I+   +N+
Sbjct: 167 SFHSDSLKSAKFDHFRWISSTGSKTLPSDIILRKLQND 204


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 175 LYLLQCCFRHGRDHALHFSQLISHMN 252
           L    CCF H  DHAL  S+ + +++
Sbjct: 205 LLCADCCFEHHEDHALRTSEQLMYID 230


>AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical
           protein Y105E8A.5 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 28/116 (24%), Positives = 54/116 (46%)
 Frame = -3

Query: 637 KMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKYLRTTNKMFVPWGHTAYRKYDFE 458
           K+T +++ P+D +V G E+  +++  +  F        L T     VP    AY  YD +
Sbjct: 192 KLTKSTAEPLDILVIGTEHCEIFLIDSQAFT------ILETIKIGSVPVNICAYGTYDVD 245

Query: 457 ILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGRAMVKNFLLIGKVHVLYNT 290
                   +V+T  + I          E  Y+P+ I ++M+ + +L+ K+ ++Y T
Sbjct: 246 YRL-----FVQTRASLI----FCMKRGEADYQPIVISQSMITSMVLVNKM-IVYTT 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,821
Number of Sequences: 27780
Number of extensions: 442448
Number of successful extensions: 1064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)