Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11e11
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 32 0.13
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 29 0.69
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.6
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 1.6
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 27 3.7
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 6.4
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 6.4
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 8.5
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 8.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.5
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = -3
Query: 769 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK---KNINYILNVMPVMQDERKMSKRKKKVI 599
N+++ +L+ + + N+D L+A VNFL K N ++ V M + +KR ++++
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLL 202
Query: 598 NNN 590
++N
Sbjct: 203 DHN 205
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/68 (19%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = -3
Query: 766 EKLLNKLESSSYN-KSNMDQLIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVIN 596
E + +S S++ + +++A++N ++ ++IN++ + + ++ K + K++V+
Sbjct: 421 EDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLR 480
Query: 595 NNKYILFN 572
K +LF+
Sbjct: 481 RIKQLLFS 488
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3
Query: 694 NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 524
+ L +K N ++ V + + K + +K V+ N IL NS W IK+P S P
Sbjct: 902 SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960
Query: 523 MWDLVKNTPELADFV 479
D N +L +
Sbjct: 961 SMDFTSNDEQLVQLL 975
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 145 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 50
EY+P SI G+K K + K+ IKN + T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 142 YVPTS--ISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 8
Y PT + +K N+V +K+ S + +NT A PT + +N +D
Sbjct: 60 YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKD 106
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 649 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 557
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 769 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 662
NEK ++ + +S N+S + QL A + L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -3
Query: 844 KGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 665
+ L+K+N+ PE+ +S + +LL L S N + + + L + ++
Sbjct: 394 ESLRKTNLSVKPEEITSRPHPLSQRVAELLYSLSMLSVNVVEAEPVARSASRLAQDYVSM 453
Query: 664 ILNVMPVMQDERKMSK 617
+ N+ + D+R+ S+
Sbjct: 454 LQNLCKTVNDKRRQSR 469
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 871 SSRIPAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSY-NKSNMDQLIAI 698
+SRIP FK LQ S+ + + E + K N+L+ Y +K ++D ++I
Sbjct: 698 TSRIPVNGFKDLQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLSI 756
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 638 LHDRHYVEDIVNVLFF 685
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 8.5
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +3
Query: 141 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 320
YSV++ +T S+TVLN + + S +N+S+ + S ++ + + NS ++
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650
Query: 321 ISQLSFNSAKFALVSTAV 374
S L NS+ STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,835,750
Number of Sequences: 5004
Number of extensions: 82382
Number of successful extensions: 314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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