Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e11
         (906 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.        33   1.4  
AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.            31   7.6  

>BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.
          Length = 97

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 814 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 635
           M E++   E A + +  K+L K   S   +S   +   + + LEK NI Y   ++  M+ 
Sbjct: 30  MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88

Query: 634 ERKMSKRKK 608
           ++K  K+KK
Sbjct: 89  QKKKKKKKK 97


>AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.
          Length = 1011

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 24/92 (26%), Positives = 44/92 (47%)
 Frame = -3

Query: 886 H*KNISSRIPAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQL 707
           H KNI + I   ++KG  K+++ N   ++      +V   E  + +L+S    K NM  L
Sbjct: 76  HVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAYKQNM-ML 132

Query: 706 IAIVNFLEKKNINYILNVMPVMQDERKMSKRK 611
             I+++   K    + + M V + +  +S RK
Sbjct: 133 PRILSYAHMKEPPEVKHAMEVNKHQSNISYRK 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,813,044
Number of Sequences: 237096
Number of extensions: 2775606
Number of successful extensions: 5997
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5995
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)