Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e10
         (183 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   1.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   4.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    18   9.5  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    18   9.5  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 139 STCKTQSRDDVICFSKLNLRNDVICFSK-LNSLYE 38
           S C   ++    C + LN    +ICFSK L+ +YE
Sbjct: 116 SECINANKSTDKCENGLNF---IICFSKLLSDMYE 147


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 96   EKQMTSSLDCVLHVEFY 146
            +K +T+++DC    E+Y
Sbjct: 956  KKHITTTIDCSTQSEYY 972


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 121 SRDDVICFSKLNLRNDVICFSKLNSL 44
           S DD     KLN+    + FSKL S+
Sbjct: 281 SYDDTDGDGKLNVNEFYMAFSKLYSV 306


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 173 CHLFKLALRVEFYV*NTI 120
           C +F  A  VEF   NTI
Sbjct: 301 CTIFLFAAMVEFAFVNTI 318


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +2

Query: 122 LCFTRRILLVKRV*TNDII 178
           +C+ + I++  +   ND+I
Sbjct: 69  MCYMKCIMIATKAMKNDVI 87


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +2

Query: 122 LCFTRRILLVKRV*TNDII 178
           +C+ + I++  +   ND+I
Sbjct: 43  MCYMKCIMIATKAMKNDVI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,210
Number of Sequences: 438
Number of extensions: 451
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)