Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e09
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   471   e-135
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   471   e-135
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   5.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  471 bits (1162), Expect = e-135
 Identities = 218/268 (81%), Positives = 239/268 (89%)
 Frame = -2

Query: 900 RVKXLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFA 721
           RVK LLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFA
Sbjct: 33  RVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFA 92

Query: 720 FKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXATSLCFVYPLDFARTRLAADVGKGDG 541
           FKDKYKQVFLGGVDK TQF RYF           ATSLCFVYPLDFARTRLAADVGK  G
Sbjct: 93  FKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGG 152

Query: 540 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPI 361
           +REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP 
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPF 212

Query: 360 VISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAF 181
           +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AF
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAF 272

Query: 180 FKGAFSNVLRGTGGAFVLVLYDEIKKVL 97
           FKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 273 FKGAFSNILRGTGGALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  471 bits (1162), Expect = e-135
 Identities = 218/268 (81%), Positives = 239/268 (89%)
 Frame = -2

Query: 900 RVKXLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFA 721
           RVK LLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFA
Sbjct: 33  RVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFA 92

Query: 720 FKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXATSLCFVYPLDFARTRLAADVGKGDG 541
           FKDKYKQVFLGGVDK TQF RYF           ATSLCFVYPLDFARTRLAADVGK  G
Sbjct: 93  FKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGG 152

Query: 540 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPI 361
           +REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP 
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPF 212

Query: 360 VISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAF 181
           +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AF
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAF 272

Query: 180 FKGAFSNVLRGTGGAFVLVLYDEIKKVL 97
           FKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 273 FKGAFSNILRGTGGALVLVLYDEIKNLL 300


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 107 LISSYKTSTKAPPVPLRTLEKAPL 178
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.137    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,954
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)