Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e08
         (842 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4J5C9 Cluster: Radical SAM domain protein; n=1; Desulf...    33   9.0  
UniRef50_A2EC30 Cluster: PIKK family atypical protein kinase; n=...    33   9.0  

>UniRef50_A4J5C9 Cluster: Radical SAM domain protein; n=1;
           Desulfotomaculum reducens MI-1|Rep: Radical SAM domain
           protein - Desulfotomaculum reducens MI-1
          Length = 247

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 245 KYVFIRIYGCNWICICMDVLGEVCPRAFYAVAEK---RRDFGKFAKP 114
           + +FIR  GCNW C   D      PR  Y   EK   +RDF + A P
Sbjct: 23  RQIFIRFAGCNWKCAFCDT--PTNPRPEYFTMEKTPGQRDFIQVANP 67


>UniRef50_A2EC30 Cluster: PIKK family atypical protein kinase; n=1;
           Trichomonas vaginalis G3|Rep: PIKK family atypical
           protein kinase - Trichomonas vaginalis G3
          Length = 2176

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +3

Query: 345 LIMQSLNIEFFYEPTLVESTFDEHCIRVFKMLNTAIIE*IL*IVAHFNSIND 500
           L++  L I+ +   T++E+    HC+++ K +NT I+E  +  +    +IN+
Sbjct: 245 LLLFLLEIKPYLPKTVIETQIQPHCLQLLKHINTNIVEYSILALTKMKTINE 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,763,967
Number of Sequences: 1657284
Number of extensions: 10431934
Number of successful extensions: 22067
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22063
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)