Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e08
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-7|AAF36006.1|  332|Caenorhabditis elegans Hypothetical ...    29   5.5  
U23450-8|AAK31471.1|  350|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AC024200-7|AAF36006.1|  332|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.8 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 380 VEKLNV*RLHDQYFKKIRKKNHNIFT*SRLIR 285
           V+K     L  QYF+KIR++ H  FT   +IR
Sbjct: 255 VKKFTENHLRMQYFRKIREELHKRFTNQHIIR 286


>U23450-8|AAK31471.1|  350|Caenorhabditis elegans Hypothetical
           protein C30B5.7 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/86 (20%), Positives = 34/86 (39%)
 Frame = -2

Query: 688 NVCCDLRICGEVENVCDYYIFRFIEAFTLELS*YIFLCNLFCDIFMTFLLGTIFFVXXXX 509
           ++C    +     ++  +Y  R   AF      +I+ CN+ C++  T      +F     
Sbjct: 175 SICVAFYLAFSENHLTSFYCGRKA-AFGEGFGTFIYCCNITCNVASTIFATAAYFKALNL 233

Query: 508 XXXXXXXLKCATI*RIYSIIAVLSIL 431
                   +   + R Y +I+VLS L
Sbjct: 234 SKTQPRMQRQVNVIRYYLLISVLSTL 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,732,658
Number of Sequences: 27780
Number of extensions: 281546
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)